Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 2.0e-253 879.4 763 100.0
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 3.7e-231 805.4 764 91.8
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 8.2e-223 777.7 764 91.5
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 1.1e-222 777.3 764 91.4
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 7.6e-221 771.2 788 68.9
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 9.1e-206 721.1 766 87.1
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 1.8e-185 653.7 760 81.8
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 5.4e-166 589.0 439 75.6
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 9.5e-163 578.2 438 72.8
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 9.2e-158 561.6 408 74.8
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 9.2e-158 561.6 408 74.8
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 2.7e-157 560.1 438 74.9
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.7e-156 557.4 408 74.3
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 6.2e-146 522.3 757 76.1
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 4.9e-119 433.0 445 56.6
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 6.4e-119 432.6 411 60.6
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 8.4e-119 432.2 446 61.9
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 1.6e-117 427.9 410 61.5
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 1.7e-79 301.6 352 47.2
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 6.5e-79 299.7 352 46.9
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 5.2e-76 290.0 414 44.7
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 8.8e-76 289.3 415 44.3
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 5.7e-75 286.6 373 46.1
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 7.5e-75 286.2 414 44.7
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 3.7e-74 283.9 383 44.6
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 1.5e-70 271.9 418 43.3
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 8.0e-69 266.2 372 41.9
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.7e-66 258.5 339 44.8
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 2.8e-66 257.7 254 53.9
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 2.8e-66 257.7 383 40.7
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.7e-66 257.3 344 43.9
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 8.3e-66 256.1 350 42.0
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 1.4e-65 255.4 339 44.8
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.8e-65 255.0 337 44.8
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 2.4e-65 254.6 368 41.6
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.1e-65 254.2 340 43.2
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 3.1e-65 254.2 279 50.5
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 4.1e-65 253.8 376 41.2
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 4.1e-65 253.8 309 45.6
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 7.0e-65 253.1 328 44.2
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 9.1e-65 252.7 320 44.7
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.6e-64 251.9 339 44.0
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 1.6e-64 251.9 343 44.6
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.0e-64 251.5 302 46.7
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 2.7e-64 251.1 439 43.7
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 5.9e-64 250.0 339 41.3
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 2.2e-63 248.1 343 41.4
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 3.8e-63 247.3 387 38.8
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 8.5e-63 246.1 331 43.5
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.2e-62 243.8 298 46.0
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 9.4e-62 242.7 345 40.9
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 1.2e-61 242.3 350 40.9
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 1.6e-61 241.9 376 39.9
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 1.6e-61 241.9 388 42.3
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 8.0e-61 239.6 344 40.1
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 3.0e-60 237.7 370 38.9
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 6.8e-60 236.5 353 41.6
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 2.6e-59 234.6 344 39.5
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 3.4e-59 234.2 357 39.8
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 8.3e-58 229.6 295 42.4
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 1.8e-57 228.4 327 38.8
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 5.4e-57 226.9 362 38.4
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 5.4e-57 226.9 348 40.5
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 7.0e-57 226.5 357 38.9
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 7.7e-56 223.0 357 37.8
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 1.7e-55 221.9 328 39.6
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 2.3e-55 221.5 289 39.8
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.9e-55 221.1 357 38.7
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 5.0e-55 220.3 309 41.4
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 8.6e-55 219.5 383 40.7
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 1.1e-54 219.2 287 40.8
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 1.1e-54 219.2 353 38.8
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 1.9e-54 218.4 339 37.8
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 7.3e-54 216.5 341 39.6
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.6e-53 215.3 331 36.6
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 3.6e-53 214.2 340 38.5
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 2.6e-51 208.0 369 38.8
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 5.7e-51 206.8 322 39.1
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 5.7e-51 206.8 364 36.8
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 1.7e-50 205.3 225 48.4
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 2.2e-50 204.9 368 36.1
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 2.2e-50 204.9 354 37.9
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 2.2e-50 204.9 335 38.8
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 2.9e-50 204.5 343 36.4
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 8.3e-50 203.0 344 36.9
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 3.2e-49 201.1 321 38.0
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 4.1e-49 200.7 343 37.3
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 9.2e-49 199.5 263 43.0
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 1.6e-48 198.7 368 35.6
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 2.7e-48 198.0 341 38.7
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 4.6e-48 197.2 359 35.9
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.6e-48 197.2 263 41.8
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.0e-47 196.1 263 42.6
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 1.3e-47 195.7 304 38.2
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.3e-47 194.9 271 40.6
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 1.9e-46 191.8 216 44.4
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 1.2e-45 189.1 202 49.5
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 1.6e-45 188.7 346 37.3
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 6.2e-45 186.8 216 44.9
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 1.0e-44 186.0 209 44.0
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 4.4e-43 180.6 223 43.0
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 1.9e-41 175.3 188 47.9
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 4.1e-41 174.1 358 35.2
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.6e-40 170.6 357 34.5
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 5.0e-39 167.2 330 33.9
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 8.6e-39 166.4 288 36.5
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 5.6e-38 163.7 241 44.4
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 7.3e-38 163.3 195 42.6
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 9.5e-38 162.9 424 36.6
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 2.1e-37 161.8 214 42.5
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 6.2e-37 160.2 236 34.3
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 1.4e-36 159.1 267 33.0
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 1.7e-34 152.1 202 41.6
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 6.4e-34 150.2 151 51.0
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 1.9e-33 148.7 260 31.5
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 7.8e-32 143.3 430 28.6
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 1.4e-28 132.5 236 35.2
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 3.8e-26 124.4 215 32.1
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 4.9e-26 124.0 251 32.3
HPP92_011504 Vanilla planifolia HOM05D003900 ORTHO05D005009 1.4e-25 122.5 365 29.9
Ca_17228_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005009 1.9e-25 122.1 202 34.7
CARHR141380 Cardamine hirsuta HOM05D003900 ORTHO05D005009 1.7e-23 115.5 123 65.0
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.4e-20 105.9 96 50.0
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 6.9e-20 103.6 118 44.1
VMungo0251G0997 Vigna mungo HOM05D003900 ORTHO05D005009 5.8e-19 100.5 165 35.8
CAN.G853.45 Capsicum annuum HOM05D003900 ORTHO05D005009 3.8e-18 97.8 155 36.8
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 8.4e-18 96.7 86 53.5
CAN.G874.71 Capsicum annuum HOM05D003900 ORTHO05D005009 7.8e-16 90.1 116 38.8
CAN.G430.2 Capsicum annuum HOM05D003900 ORTHO05D005009 3.1e-12 78.2 123 39.8
SEGI_18390 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 5.3e-12 77.4 205 26.3
Aqoxy4G00899 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 2.6e-11 75.1 183 32.2
SEGI_22559 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.6e-11 75.1 83 41.0
SEGI_08205 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 9.9e-11 73.2 85 38.8
CAN.G460.4 Capsicum annuum HOM05D003900 ORTHO05D005009 1.4e-09 69.3 101 38.6
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 1.4e-09 69.3 209 25.4
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 3.2e-09 68.2 209 25.4
SEGI_36720 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 7.1e-09 67.0 174 28.2
SEGI_28461 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.6e-08 65.9 88 35.2
SEGI_03438 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 3.5e-08 64.7 91 36.3
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 1.0e-07 63.2 142 30.3
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 1.3e-07 62.8 90 41.1
Aqoxy4G00696 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 3.0e-07 61.6 184 31.0
Cc02_g34450 Coffea canephora HOM05D000162 ORTHO05D000090 3.0e-07 61.6 158 27.8
Aqoxy2G02642 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 5.1e-07 60.8 105 33.3
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 6.7e-07 60.5 56 55.4
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 6.7e-07 60.5 164 26.8
Zm00001eb280170 Zea mays HOM05D003900 ORTHO05D005009 1.1e-06 59.7 84 38.1
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 1.5e-06 59.3 120 24.2
CiPaw.12G117200 Carya illinoinensis HOM05D000424 ORTHO05D000355 3.3e-06 58.2 173 28.9
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 4.3e-06 57.8 161 24.8
Cc02_g34440 Coffea canephora HOM05D000162 ORTHO05D000090 5.6e-06 57.4 183 24.6
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 7.4e-06 57.0 164 24.4
FAN08G3007 Fragaria x ananassa HOM05D003900 ORTHO05D005009 7.4e-06 57.0 45 55.6
Manes.15G095900 Manihot esculenta HOM05D002453 ORTHO05D008746 7.4e-06 57.0 138 28.3
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 7.4e-06 57.0 176 26.1
Peaxi162Scf01035g00011 Petunia axillaris HOM05D000001 ORTHO05D000003 7.4e-06 57.0 184 27.2
SEGI_07919 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 7.4e-06 57.0 66 36.4


User provided reference genes

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