Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 3.1e-306 1054.3 516 100.0
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 2.6e-281 971.5 516 92.2
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 1.7e-280 968.8 516 92.2
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 2.4e-279 964.9 516 91.9
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 3.2e-279 964.5 516 92.1
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 1.2e-278 962.6 516 91.7
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 1.4e-266 922.5 526 87.5
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 5.5e-255 884.0 509 85.9
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 5.5e-255 884.0 526 83.5
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 1.0e-253 879.8 523 83.4
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 6.7e-253 877.1 526 82.9
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 7.9e-246 853.6 469 87.8
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 7.7e-233 810.4 525 76.6
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 8.5e-224 780.4 505 75.2
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 1.9e-223 779.2 506 74.5
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 9.1e-218 760.4 483 78.5
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 2.0e-217 759.2 522 71.3
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 2.7e-217 758.8 508 71.9
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 2.7e-217 758.8 478 75.7
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 2.2e-216 755.7 519 71.9
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.9e-215 752.7 524 71.4
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 1.9e-215 752.7 468 76.7
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 5.5e-215 751.1 500 73.0
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 7.2e-215 750.7 465 76.3
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 1.2e-214 750.0 527 69.4
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 2.1e-214 749.2 523 70.9
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 6.1e-214 747.7 473 76.1
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 8.0e-214 747.3 497 71.8
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 8.0e-214 747.3 520 70.2
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 3.0e-213 745.3 520 69.8
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 6.8e-213 744.2 512 70.1
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 8.8e-213 743.8 523 69.8
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 1.5e-212 743.0 526 70.2
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 3.4e-212 741.9 478 73.8
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 3.4e-212 741.9 513 71.2
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 7.5e-212 740.7 455 78.0
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 1.3e-211 740.0 507 70.2
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 1.7e-211 739.6 514 70.4
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 2.8e-211 738.8 522 69.3
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 3.7e-211 738.4 501 71.7
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 6.3e-211 737.6 452 77.0
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 8.3e-211 737.3 474 74.7
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 8.3e-211 737.3 521 70.6
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 1.1e-210 736.9 496 71.8
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 1.8e-210 736.1 521 69.1
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 7.0e-210 734.2 524 69.3
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 1.2e-209 733.4 520 70.8
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 2.0e-209 732.6 522 70.5
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 2.7e-209 732.3 472 73.3
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 3.5e-209 731.9 527 68.7
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 4.5e-209 731.5 473 73.8
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 1.0e-208 730.3 524 68.7
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 1.3e-208 729.9 499 70.9
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 5.0e-208 728.0 536 66.8
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 8.6e-208 727.2 456 75.0
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 1.5e-207 726.5 473 74.4
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 1.9e-207 726.1 473 73.4
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 4.2e-207 724.9 520 69.6
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 5.5e-207 724.5 458 76.0
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 9.5e-207 723.8 468 74.4
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.2e-206 723.4 507 69.2
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 1.6e-206 723.0 473 75.3
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 2.1e-206 722.6 500 70.4
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 2.1e-206 722.6 473 72.9
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 2.1e-206 722.6 523 69.0
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 2.8e-206 722.2 508 70.1
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 6.1e-206 721.1 454 75.1
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 5.2e-205 718.0 511 68.3
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.0e-204 716.1 501 69.5
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 5.7e-204 714.5 468 72.9
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 2.8e-203 712.2 461 74.0
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 3.7e-203 711.8 461 74.0
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 2.4e-202 709.1 478 70.7
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 3.1e-202 708.8 453 74.4
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 5.4e-202 708.0 539 66.6
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 9.2e-202 707.2 443 75.4
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 3.8e-200 701.8 465 70.3
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 5.0e-200 701.4 465 71.8
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 2.5e-199 699.1 503 67.2
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 5.6e-199 698.0 457 71.3
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 7.3e-199 697.6 512 67.2
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 2.1e-198 696.0 523 66.0
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 1.4e-197 693.3 515 65.8
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.4e-197 693.3 456 72.4
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 2.3e-197 692.6 452 71.2
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 3.0e-197 692.2 454 73.3
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 4.4e-196 688.3 453 71.7
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 8.3e-195 684.1 455 71.4
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 2.4e-194 682.6 463 69.3
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 4.1e-194 681.8 451 69.6
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 1.6e-185 653.3 466 67.2
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 7.3e-183 644.4 464 66.4
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 1.5e-175 620.2 523 61.0
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 2.4e-173 612.8 447 63.1
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 4.4e-172 608.6 456 63.2
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 4.9e-171 605.1 454 66.3
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 3.5e-169 599.0 488 60.9
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 7.8e-169 597.8 474 62.0
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 3.3e-167 592.4 445 63.1
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 1.8e-165 586.6 366 76.5
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 3.2e-162 575.9 402 70.4
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 1.2e-161 573.9 493 59.8
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 8.7e-160 567.8 388 70.6
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 1.7e-131 473.8 307 71.7
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 3.6e-129 466.1 463 51.8
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 9.1e-125 451.4 488 52.5
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 1.0e-115 421.4 280 72.5
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 1.1e-109 401.4 476 46.8
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 2.7e-105 386.7 273 67.0
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 1.5e-103 380.9 464 46.6
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 2.9e-78 297.0 459 38.8
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 4.9e-38 163.3 100 74.0
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 2.3e-35 154.5 226 38.9
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 3.4e-31 140.6 72 87.5
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 1.3e-30 138.7 96 70.8
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 1.3e-30 138.7 96 70.8
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 1.3e-30 138.7 96 70.8
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 1.3e-30 138.7 96 70.8
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 3.7e-25 120.6 277 32.9
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 2.9e-22 110.9 57 87.7
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 3.2e-13 80.9 43 88.4
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 3.0e-11 74.3 98 45.9
BcaC08g45232 Brassica carinata HOM05D000289 ORTHO05D000208 4.8e-09 67.0 42 71.4
Actinidia17930 Actinidia chinensis HOM05D006382 ORTHO05D008938 6.9e-08 63.2 41 78.0
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 1.5e-07 62.0 40 70.0


User provided reference genes

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