Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 6.3e-44 180.3 83 100.0
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 2.6e-42 174.9 81 97.5
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 2.9e-41 171.4 81 95.1
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 1.1e-40 169.5 80 96.2
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 7.2e-40 166.8 84 92.9
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 9.4e-40 166.4 81 95.1
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 9.4e-40 166.4 81 95.1
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 9.4e-40 166.4 81 95.1
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 9.4e-40 166.4 81 95.1
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 9.4e-40 166.4 81 95.1
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 9.4e-40 166.4 81 95.1
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.6e-39 165.6 84 91.7
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 1.6e-39 165.6 84 91.7
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.7e-39 164.9 81 93.8
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.7e-39 164.9 81 93.8
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 3.6e-39 164.5 81 93.8
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 3.6e-39 164.5 81 93.8
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 6.1e-39 163.7 81 92.6
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 6.1e-39 163.7 81 92.6
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 2.3e-38 161.8 82 90.2
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 3.0e-38 161.4 84 91.7
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 3.0e-38 161.4 84 91.7
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 3.0e-38 161.4 84 91.7
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 3.9e-38 161.0 84 89.3
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 3.9e-38 161.0 83 89.2
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 5.1e-38 160.6 81 92.6
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 6.7e-38 160.2 81 92.6
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 8.8e-38 159.8 84 90.5
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 1.1e-37 159.5 81 90.1
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 1.1e-37 159.5 83 89.2
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 2.5e-37 158.3 84 88.1
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 2.5e-37 158.3 83 86.7
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 5.7e-37 157.1 82 87.8
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 5.7e-37 157.1 83 86.7
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 5.7e-37 157.1 82 89.0
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 7.4e-37 156.8 83 85.5
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 7.4e-37 156.8 83 86.7
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 9.7e-37 156.4 83 84.3
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 1.7e-36 155.6 83 86.7
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 1.7e-36 155.6 83 86.7
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 1.7e-36 155.6 85 87.1
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 3.7e-36 154.5 83 84.3
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 4.8e-36 154.1 82 85.4
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 8.2e-36 153.3 82 85.4
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 8.2e-36 153.3 82 85.4
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 8.2e-36 153.3 82 85.4
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 8.2e-36 153.3 82 81.7
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 1.1e-35 152.9 83 84.3
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.4e-35 152.5 83 84.3
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 1.8e-35 152.1 83 84.3
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 3.1e-35 151.4 85 81.2
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 3.1e-35 151.4 84 83.3
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 3.1e-35 151.4 82 82.9
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 3.1e-35 151.4 82 82.9
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 3.1e-35 151.4 84 84.5
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 4.1e-35 151.0 83 79.5
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 5.3e-35 150.6 78 87.2
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 5.3e-35 150.6 84 83.3
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 5.3e-35 150.6 82 80.5
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 9.1e-35 149.8 82 84.1
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 1.2e-34 149.4 81 85.2
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 1.5e-34 149.1 82 81.7
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 1.5e-34 149.1 86 81.4
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 1.5e-34 149.1 83 83.1
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 1.5e-34 149.1 78 82.1
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 1.5e-34 149.1 83 79.5
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 1.5e-34 149.1 85 82.4
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 1.5e-34 149.1 86 77.9
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 2.0e-34 148.7 85 80.0
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 2.0e-34 148.7 82 81.7
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.0e-34 148.7 82 82.9
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.0e-34 148.7 82 82.9
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 2.0e-34 148.7 82 82.9
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 2.6e-34 148.3 78 84.6
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 3.4e-34 147.9 74 87.8
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 3.4e-34 147.9 83 79.5
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 4.5e-34 147.5 83 78.3
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 4.5e-34 147.5 82 82.9
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 4.5e-34 147.5 82 81.7
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 7.7e-34 146.7 84 82.1
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 7.7e-34 146.7 82 80.5
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 7.7e-34 146.7 82 80.5
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 7.7e-34 146.7 82 80.5
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 7.7e-34 146.7 82 81.7
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 7.7e-34 146.7 82 84.1
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 1.0e-33 146.4 77 84.4
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 1.0e-33 146.4 84 81.0
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 1.0e-33 146.4 82 81.7
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 1.3e-33 146.0 83 79.5
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 1.3e-33 146.0 83 79.5
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 1.3e-33 146.0 83 79.5
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 1.3e-33 146.0 82 82.9
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.3e-33 146.0 82 82.9
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.3e-33 146.0 82 82.9
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.3e-33 146.0 82 82.9
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.3e-33 146.0 76 88.2
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 1.7e-33 145.6 81 80.2
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 1.7e-33 145.6 82 80.5
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 2.2e-33 145.2 74 86.5
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 2.2e-33 145.2 74 86.5
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 2.2e-33 145.2 76 85.5
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 5.0e-33 144.1 81 79.0
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 6.5e-33 143.7 77 81.8
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 6.5e-33 143.7 74 85.1
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 1.1e-32 142.9 71 88.7
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 1.1e-32 142.9 78 82.1
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 1.1e-32 142.9 85 77.6
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 1.1e-32 142.9 78 82.1
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.4e-32 142.5 85 78.8
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.9e-32 142.1 69 91.3
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 2.5e-32 141.7 85 76.5
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 2.5e-32 141.7 103 67.0
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 2.5e-32 141.7 85 76.5
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 3.2e-32 141.4 79 78.5
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 4.2e-32 141.0 74 83.8
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 7.2e-32 140.2 74 83.8
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 9.4e-32 139.8 87 73.6
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 4.7e-31 137.5 100 67.0
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 7.9e-31 136.7 83 75.9
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 8.8e-30 133.3 63 92.1
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 2.0e-29 132.1 61 93.4
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 3.3e-29 131.3 75 78.7
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 3.3e-29 131.3 62 91.9
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 3.3e-29 131.3 62 91.9
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 9.7e-29 129.8 60 93.3
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 9.7e-29 129.8 61 91.8
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 2.2e-28 128.6 57 96.5
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 4.8e-28 127.5 110 60.0
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 7.0e-27 123.6 70 75.7
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 6.5e-25 117.1 50 98.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 9.4e-24 113.2 50 96.0
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 2.1e-23 112.1 63 79.4
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 3.6e-23 111.3 50 92.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 1.4e-22 109.4 50 92.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 1.7e-20 102.4 49 85.7
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 3.7e-20 101.3 83 56.6
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 6.3e-20 100.5 68 66.2
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 3.1e-19 98.2 83 59.0
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 3.1e-19 98.2 83 54.2
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 3.5e-18 94.7 61 78.7
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 1.7e-17 92.4 83 53.0
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 4.8e-12 74.3 63 49.2
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 6.1e-07 57.4 29 82.8
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 3.0e-06 55.1 23 91.3
Medtr8g058533 Medicago truncatula HOM05D005224 ORTHO05D006372 3.0e-06 55.1 53 60.4


User provided reference genes

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