Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 2.4e-103 379.0 215 100.0
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 2.2e-88 329.3 216 86.1
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 2.8e-88 328.9 214 88.3
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 7.7e-86 320.9 216 85.2
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 5.0e-85 318.2 216 85.2
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 7.2e-84 314.3 223 84.3
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 8.8e-82 307.4 223 81.6
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 2.6e-81 305.8 223 80.7
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 1.7e-80 303.1 205 84.9
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 2.4e-79 299.3 222 80.6
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 3.5e-78 295.4 222 80.2
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 1.2e-73 280.4 216 76.4
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 2.8e-72 275.8 212 76.4
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 8.3e-72 274.2 222 77.0
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 3.5e-70 268.9 214 73.8
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 2.3e-66 256.1 214 71.5
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 8.8e-66 254.2 212 78.3
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 6.4e-56 221.5 230 64.8
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 3.6e-43 179.1 204 57.4
CARHR073810 Cardamine hirsuta HOM05D005915 ORTHO05D007239 1.6e-35 153.7 112 69.6
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 7.6e-33 144.8 198 46.5
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 5.4e-31 138.7 203 43.3
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 9.2e-31 137.9 221 45.7
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 1.3e-29 134.0 218 44.5
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 1.7e-29 133.7 215 48.8
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 2.3e-29 133.3 229 45.4
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 6.6e-29 131.7 216 48.1
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 1.1e-28 131.0 186 48.9
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 1.1e-28 131.0 237 44.3
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 1.1e-28 131.0 152 50.0
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 1.5e-28 130.6 178 45.5
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 1.9e-28 130.2 199 42.7
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 3.3e-28 129.4 226 42.0
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 3.3e-28 129.4 193 47.7
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 9.6e-28 127.9 193 42.5
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 1.2e-27 127.5 228 43.9
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 1.2e-27 127.5 228 46.9
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 1.6e-27 127.1 221 43.0
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.6e-27 127.1 232 39.2
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 2.1e-27 126.7 177 46.3
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 3.6e-27 125.9 169 47.9
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 4.7e-27 125.6 200 47.5
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 6.2e-27 125.2 217 46.5
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 8.1e-27 124.8 169 46.7
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 1.1e-26 124.4 221 43.9
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 1.4e-26 124.0 227 44.1
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 2.4e-26 123.2 193 44.0
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 5.2e-26 122.1 189 50.3
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 1.2e-25 120.9 211 41.2
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 2.0e-25 120.2 123 49.6
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 2.6e-25 119.8 181 49.2
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 4.4e-25 119.0 215 45.1
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 4.4e-25 119.0 220 41.8
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 5.8e-25 118.6 152 44.7
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 7.6e-25 118.2 224 39.3
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 1.3e-24 117.5 189 41.8
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 2.9e-24 116.3 162 43.2
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 3.8e-24 115.9 146 48.6
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 6.4e-24 115.2 174 54.0
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 1.9e-23 113.6 191 42.9
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 1.9e-23 113.6 213 44.1
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 2.4e-23 113.2 162 42.6
BolC3t13327H Brassica oleracea HOM05D005915 ORTHO05D007239 4.2e-23 112.5 117 62.4
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 5.4e-23 112.1 212 41.5
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 1.6e-22 110.5 212 41.5
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 2.1e-22 110.2 201 43.3
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 2.1e-22 110.2 221 41.6
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 2.7e-22 109.8 213 40.4
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 6.0e-22 108.6 158 43.0
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 1.3e-21 107.5 187 41.7
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 1.3e-21 107.5 165 52.1
AL5G28080 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 1.7e-21 107.1 102 70.6
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 2.3e-21 106.7 197 39.1
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 3.9e-21 105.9 157 49.0
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 6.6e-21 105.1 188 43.1
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 1.1e-20 104.4 114 55.3
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 1.5e-20 104.0 218 38.5
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 1.9e-20 103.6 218 35.3
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 2.5e-20 103.2 188 43.6
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 1.3e-19 100.9 222 36.5
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 1.6e-19 100.5 161 50.3
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 1.6e-19 100.5 183 39.9
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 2.1e-19 100.1 205 39.5
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 2.8e-19 99.8 216 36.6
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 2.8e-19 99.8 180 46.1
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 3.6e-19 99.4 181 42.0
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 4.8e-19 99.0 165 44.8
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 2.4e-18 96.7 87 57.5
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 4.0e-18 95.9 141 49.6
Lalb_Chr01g0012181 Lupinus albus HOM05D005915 ORTHO05D007239 5.3e-18 95.5 221 40.7
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 1.2e-17 94.4 141 48.9
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 2.6e-17 93.2 143 45.5
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 3.8e-16 89.4 262 30.2
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 8.4e-16 88.2 180 45.0
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 2.4e-15 86.7 115 43.5
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 4.2e-15 85.9 247 36.4
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 5.4e-15 85.5 155 45.8
SEGI_14387 Sequoiadendron giganteum HOM05D005915 ORTHO05D007239 5.4e-15 85.5 164 34.8
Zm00001eb174980 Zea mays HOM05D005915 ORTHO05D007239 1.2e-14 84.3 160 41.9
FAN18G1559 Fragaria x ananassa HOM05D005915 ORTHO05D007239 2.7e-14 83.2 132 52.3
ATR1120G130 Amborella trichopoda HOM05D005915 ORTHO05D007239 7.9e-14 81.6 119 52.9
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 1.0e-13 81.3 214 39.7
Nitab4.5_0004330g0010 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.8e-13 80.5 112 48.2
Cc04_g04930 Coffea canephora HOM05D005915 ORTHO05D007239 1.9e-12 77.0 111 46.8
Peaxi162Scf00332g00322 Petunia axillaris HOM05D005915 ORTHO05D007239 7.4e-12 75.1 213 31.5
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 1.3e-11 74.3 198 31.8
Mapoly0140s0034 Marchantia polymorpha HOM05D005915 ORTHO05D007239 2.8e-11 73.2 75 50.7
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 3.6e-11 72.8 63 68.3
CDE05G3202 Ceratophyllum demersum HOM05D005915 ORTHO05D007239 1.8e-10 70.5 99 55.6
ClCG00G004860 Citrullus lanatus HOM05D005915 ORTHO05D007239 6.9e-10 68.6 79 46.8
Glyma.07G025532 Glycine max HOM05D005915 ORTHO05D007239 9.0e-10 68.2 48 58.3
FAN08G0623 Fragaria x ananassa HOM05D005915 ORTHO05D007239 2.6e-09 66.6 214 36.4
Os08g0278100 Oryza sativa ssp. japonica HOM05D005915 ORTHO05D007239 4.5e-09 65.9 199 34.2
Haze_16650 Corylus avellana HOM05D005915 ORTHO05D007239 9.9e-09 64.7 48 62.5
Cpa.g.sc0.147 Carica papaya HOM05D005915 ORTHO05D007239 2.2e-08 63.5 120 37.5
GSVIVG01017558001 Vitis vinifera HOM05D005915 ORTHO05D007239 2.9e-08 63.2 78 48.7
Pp3c9_20610 Physcomitrium patens HOM05D005915 ORTHO05D007239 1.1e-07 61.2 209 28.2
Actinidia25450 Actinidia chinensis HOM05D005915 ORTHO05D007239 3.2e-07 59.7 34 76.5
GSVIVG01017559001 Vitis vinifera HOM05D005915 ORTHO05D007239 3.2e-07 59.7 131 38.9
Prupe.1G199000 Prunus persica HOM05D005915 ORTHO05D007239 3.5e-06 56.2 118 44.9
CBR_g23038 Chara braunii HOM05D005915 ORTHO05D007239 6.0e-06 55.5 85 35.3
TAR625G0588 Trochodendron aralioides HOM05D005915 ORTHO05D007239 6.0e-06 55.5 61 49.2


User provided reference genes

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