Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 3.3e-116 421.8 221 100.0
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 2.6e-105 385.6 222 94.6
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 2.6e-105 385.6 222 94.6
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 3.8e-104 381.7 222 93.7
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 2.4e-103 379.0 222 93.7
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 7.9e-102 374.0 222 93.2
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 6.7e-101 370.9 225 91.6
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 3.3e-100 368.6 225 91.1
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 9.6e-100 367.1 221 91.4
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 2.4e-98 362.5 226 89.8
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 2.6e-97 359.0 227 88.5
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 2.6e-97 359.0 227 88.5
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 7.6e-97 357.5 219 90.9
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 2.5e-95 352.4 221 87.8
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 3.2e-95 352.1 221 87.8
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 7.1e-95 350.9 221 87.8
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 9.3e-95 350.5 221 87.8
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 2.2e-88 329.3 223 80.7
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 8.5e-80 300.8 212 76.9
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 2.8e-75 285.8 180 86.7
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 3.5e-65 252.3 217 67.3
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.7e-64 250.0 215 66.5
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.2e-64 249.6 213 66.7
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 1.1e-63 247.3 201 68.2
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 3.2e-63 245.7 214 65.9
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 5.5e-63 245.0 190 68.9
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 4.7e-62 241.9 220 64.1
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 6.1e-62 241.5 199 67.8
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.0e-61 240.7 216 64.4
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.4e-61 240.4 204 67.2
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.4e-61 240.4 200 67.0
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 2.3e-61 239.6 197 68.0
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 4.0e-61 238.8 208 63.5
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 6.7e-61 238.0 191 68.1
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 1.1e-60 237.3 219 60.3
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.5e-60 236.9 196 68.9
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.5e-60 236.9 218 65.1
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 3.3e-60 235.7 192 65.6
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 4.4e-60 235.3 156 82.7
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 4.4e-60 235.3 205 65.9
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 7.5e-60 234.6 193 68.4
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 1.3e-59 233.8 202 64.9
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 1.7e-59 233.4 210 65.2
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 2.2e-59 233.0 205 65.4
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 2.2e-59 233.0 205 65.9
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 2.8e-59 232.6 213 61.5
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 2.8e-59 232.6 205 66.3
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 4.8e-59 231.9 212 63.7
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.3e-59 231.5 205 64.9
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 6.3e-59 231.5 212 63.7
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 6.3e-59 231.5 226 59.7
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 1.1e-58 230.7 228 61.0
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 1.1e-58 230.7 199 62.8
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 1.1e-58 230.7 202 64.4
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 1.1e-58 230.7 214 63.6
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 1.4e-58 230.3 212 63.7
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 1.8e-58 229.9 212 60.8
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.8e-58 229.9 211 64.5
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 3.1e-58 229.2 192 64.1
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 5.3e-58 228.4 195 65.6
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 9.1e-58 227.6 200 66.0
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 9.1e-58 227.6 204 60.8
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 9.1e-58 227.6 218 59.6
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.2e-57 227.3 197 62.9
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.2e-57 227.3 197 64.0
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.6e-57 226.9 200 60.0
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 1.6e-57 226.9 197 64.0
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 2.0e-57 226.5 199 64.3
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 2.7e-57 226.1 215 60.5
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 5.9e-57 224.9 180 70.0
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.0e-56 224.2 223 59.2
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.0e-56 224.2 217 60.4
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.3e-56 223.8 240 54.6
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 2.2e-56 223.0 220 61.4
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 2.9e-56 222.6 207 62.8
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 2.9e-56 222.6 226 61.9
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 5.0e-56 221.9 194 66.0
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 6.5e-56 221.5 207 58.5
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 1.1e-55 220.7 195 60.0
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 1.9e-55 219.9 195 62.6
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 3.2e-55 219.2 198 63.1
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 3.2e-55 219.2 183 67.2
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 3.2e-55 219.2 194 59.8
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 4.2e-55 218.8 191 63.4
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 1.2e-54 217.2 195 65.6
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.6e-54 216.9 205 60.5
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 2.1e-54 216.5 226 58.0
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 4.7e-54 215.3 202 59.9
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 6.1e-54 214.9 215 59.5
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 6.1e-54 214.9 205 62.4
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 8.0e-54 214.5 151 73.5
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 8.0e-54 214.5 131 82.4
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 1.4e-53 213.8 217 59.0
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 1.4e-53 213.8 207 58.0
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 1.8e-53 213.4 193 63.2
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 1.8e-53 213.4 167 67.7
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 4.0e-53 212.2 213 59.2
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 5.2e-53 211.8 142 76.8
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 5.2e-53 211.8 205 62.0
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 5.2e-53 211.8 194 58.2
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 6.8e-53 211.5 207 58.0
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 8.8e-53 211.1 200 57.5
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 1.2e-52 210.7 162 70.4
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.5e-52 210.3 184 64.1
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 2.0e-52 209.9 159 71.7
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.6e-52 209.5 163 69.9
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 5.7e-52 208.4 163 68.7
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 3.1e-50 202.6 180 63.9
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 4.5e-49 198.7 183 65.0
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 7.7e-49 198.0 199 58.8
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 1.0e-48 197.6 154 70.1
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 1.7e-48 196.8 203 61.1
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 6.5e-48 194.9 140 72.9
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 3.2e-47 192.6 130 72.3
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 4.2e-47 192.2 195 61.5
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 7.2e-47 191.4 202 57.4
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 9.5e-47 191.0 202 57.4
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 2.1e-46 189.9 207 55.1
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 3.6e-46 189.1 195 59.5
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 5.7e-44 181.8 158 62.0
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 9.8e-44 181.0 127 74.8
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 5.4e-42 175.3 130 70.0
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 2.0e-41 173.3 130 68.5
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.3e-40 169.9 137 65.0
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 3.3e-39 166.0 131 65.6
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 7.3e-39 164.9 213 51.6
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 7.3e-39 164.9 136 64.7
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 1.8e-34 150.2 78 94.9
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 1.8e-34 150.2 78 94.9
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 9.5e-31 137.9 126 61.1
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 1.4e-29 134.0 141 55.3
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 1.3e-27 127.5 201 45.3
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.7e-27 127.1 212 43.9
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 6.0e-25 118.6 125 56.0
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 8.9e-21 104.8 69 76.8
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 1.9e-15 87.0 70 67.1
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 4.7e-14 82.4 70 65.7
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 4.9e-11 72.4 137 38.0
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 5.4e-10 68.9 45 77.8
CARHR073520 Cardamine hirsuta HOM05D005382 ORTHO05D006795 7.8e-09 65.1 48 75.0


User provided reference genes

Program Settings