Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 3.1e-66 255.0 127 100.0
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 1.3e-64 249.6 127 97.6
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 4.9e-64 247.7 126 96.0
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 6.4e-64 247.3 127 96.9
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 6.4e-64 247.3 127 96.9
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 6.4e-64 247.3 127 96.9
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 5.4e-63 244.2 127 95.3
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 5.4e-63 244.2 127 95.3
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 5.4e-63 244.2 127 95.3
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 1.6e-62 242.7 127 94.5
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 1.6e-62 242.7 127 95.3
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 1.9e-60 235.7 127 89.8
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 1.9e-60 235.7 127 91.3
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 5.6e-60 234.2 127 89.8
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 6.2e-59 230.7 124 90.3
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 2.2e-56 222.2 120 89.2
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 5.4e-55 217.6 123 87.0
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 4.3e-52 208.0 126 78.6
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 9.6e-52 206.8 124 79.8
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 2.1e-51 205.7 126 78.6
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 2.8e-51 205.3 126 77.0
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.1e-50 203.4 118 80.5
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.1e-50 203.4 118 84.7
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.1e-50 203.4 118 84.7
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.1e-50 203.4 126 78.6
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.8e-50 202.6 126 75.4
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 1.8e-50 202.6 118 78.0
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.8e-50 202.6 118 80.5
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 1.8e-50 202.6 118 80.5
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 2.4e-50 202.2 126 73.8
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 2.4e-50 202.2 115 85.2
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 3.1e-50 201.8 116 80.2
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 5.2e-50 201.1 124 79.0
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 1.2e-49 199.9 126 74.6
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 1.2e-49 199.9 114 83.3
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 2.0e-49 199.1 120 76.7
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 2.6e-49 198.7 126 74.6
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 2.6e-49 198.7 126 74.6
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 4.4e-49 198.0 126 75.4
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 7.6e-49 197.2 126 74.6
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 9.9e-49 196.8 126 72.2
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 9.9e-49 196.8 126 75.4
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 1.3e-48 196.4 126 73.8
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 2.2e-48 195.7 120 76.7
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 3.8e-48 194.9 116 78.4
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 3.8e-48 194.9 126 74.6
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 8.4e-48 193.7 126 72.2
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 8.4e-48 193.7 126 73.8
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 8.4e-48 193.7 119 74.8
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 1.9e-47 192.6 126 70.6
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 1.9e-47 192.6 126 73.0
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 5.4e-47 191.0 120 75.8
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 7.1e-47 190.7 126 72.2
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 7.1e-47 190.7 126 72.2
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 9.3e-47 190.3 119 76.5
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 9.3e-47 190.3 124 71.0
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 1.2e-46 189.9 125 72.8
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 2.7e-46 188.7 122 73.8
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 3.5e-46 188.3 148 63.5
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 4.6e-46 188.0 126 69.0
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 7.8e-46 187.2 126 69.0
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.0e-45 186.8 118 74.6
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.3e-45 186.4 118 74.6
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 1.3e-45 186.4 126 69.0
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 2.3e-45 185.7 126 69.0
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 2.3e-45 185.7 120 73.3
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 3.0e-45 185.3 116 75.9
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 3.0e-45 185.3 126 69.0
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 3.0e-45 185.3 113 77.0
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 1.5e-44 183.0 113 75.2
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.5e-44 182.2 140 64.3
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 3.3e-44 181.8 123 70.7
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 3.3e-44 181.8 116 73.3
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 4.3e-44 181.4 118 72.0
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 5.6e-44 181.0 126 69.0
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 9.6e-44 180.3 122 69.7
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 9.6e-44 180.3 116 71.6
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 2.8e-43 178.7 114 72.8
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 3.6e-43 178.3 120 72.5
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.6e-43 178.3 120 72.5
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 8.1e-43 177.2 150 60.7
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 8.1e-43 177.2 120 71.7
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 8.1e-43 177.2 120 71.7
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 1.1e-42 176.8 116 69.8
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 1.4e-42 176.4 118 71.2
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 1.4e-42 176.4 114 71.9
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 1.4e-42 176.4 114 71.9
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 2.4e-42 175.6 114 73.7
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 2.4e-42 175.6 114 73.7
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 2.4e-42 175.6 114 69.3
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 3.1e-42 175.3 142 59.9
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 4.0e-42 174.9 116 69.0
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 9.0e-42 173.7 116 69.8
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 3.4e-41 171.8 109 69.7
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 3.4e-41 171.8 116 69.0
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 5.8e-41 171.0 116 69.0
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 7.6e-41 170.6 120 69.2
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 9.9e-41 170.2 121 67.8
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 2.2e-40 169.1 105 72.4
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 2.2e-40 169.1 116 67.2
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 2.9e-40 168.7 124 66.1
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 4.9e-40 167.9 110 69.1
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 8.4e-40 167.2 117 68.4
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 8.4e-40 167.2 109 67.9
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 1.9e-39 166.0 122 68.0
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 1.9e-39 166.0 106 68.9
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 1.3e-37 159.8 84 96.4
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 9.3e-31 137.1 68 95.6
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 9.0e-26 120.6 85 69.4
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 7.6e-25 117.5 72 69.4
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 4.9e-24 114.8 68 73.5
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 6.5e-24 114.4 68 72.1
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 6.5e-24 114.4 73 69.9
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 8.4e-24 114.0 66 74.2
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 1.4e-23 113.2 59 93.2
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.4e-23 113.2 58 94.8
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 5.5e-23 111.3 58 86.2
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 9.3e-23 110.5 112 46.4
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 9.3e-23 110.5 112 48.2
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 1.2e-22 110.2 112 46.4
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 4.6e-22 108.2 75 64.0
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 3.9e-21 105.1 66 68.2
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 9.7e-20 100.5 77 58.4
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 1.6e-19 99.8 114 43.9
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 2.2e-19 99.4 66 63.6
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 2.8e-19 99.0 69 73.9
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 3.7e-19 98.6 52 92.3
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 1.8e-18 96.3 69 71.0
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 4.1e-18 95.1 79 64.6
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.5e-17 93.2 58 77.6
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 2.6e-17 92.4 59 78.0
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.3e-16 90.1 59 74.6
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 2.2e-16 89.4 45 93.3
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 6.5e-16 87.8 71 59.2
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 1.4e-15 86.7 108 46.3
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.5e-15 85.9 57 71.9
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 5.5e-15 84.7 61 67.2
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 5.1e-13 78.2 69 53.6
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 8.8e-13 77.4 125 34.4
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 2.5e-12 75.9 94 46.8
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 3.8e-08 62.0 46 60.9


User provided reference genes

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