Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 8.0e-55 216.9 110 100.0
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 4.9e-12 74.7 39 94.9
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 4.2e-11 71.6 43 81.4
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 4.2e-11 71.6 41 87.8
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 4.2e-11 71.6 41 87.8
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 9.3e-11 70.5 41 85.4
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 9.3e-11 70.5 41 85.4
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 9.3e-11 70.5 41 85.4
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 9.3e-11 70.5 41 85.4
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 9.3e-11 70.5 41 85.4
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 1.2e-10 70.1 41 85.4
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 1.6e-10 69.7 41 82.9
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 1.6e-10 69.7 41 82.9
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 1.6e-10 69.7 41 82.9
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 1.6e-10 69.7 41 82.9
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 2.1e-10 69.3 41 82.9
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 2.1e-10 69.3 41 82.9
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 2.7e-10 68.9 39 87.2
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 2.7e-10 68.9 39 87.2
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 2.7e-10 68.9 39 87.2
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 3.5e-10 68.6 44 77.3
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 4.6e-10 68.2 39 87.2
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 6.0e-10 67.8 41 82.9
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 7.8e-10 67.4 41 80.5
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 1.0e-09 67.0 39 84.6
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 2.3e-09 65.9 46 73.9
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 3.9e-09 65.1 42 81.0
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 3.9e-09 65.1 42 81.0
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 8.7e-09 63.9 39 79.5
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.5e-08 62.4 39 79.5
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 3.3e-08 62.0 38 78.9
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 4.3e-08 61.6 39 76.9
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 4.3e-08 61.6 39 76.9
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 5.6e-08 61.2 39 76.9
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 7.3e-08 60.8 39 76.9
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 9.6e-08 60.5 39 74.4
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 9.6e-08 60.5 39 74.4
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 9.6e-08 60.5 39 76.9
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 9.6e-08 60.5 43 67.4
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 9.6e-08 60.5 42 71.4
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 9.6e-08 60.5 42 71.4
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.3e-07 60.1 39 74.4
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.3e-07 60.1 39 74.4
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 1.3e-07 60.1 39 74.4
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 1.3e-07 60.1 37 78.4
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.3e-07 60.1 37 78.4
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.3e-07 60.1 37 78.4
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 1.3e-07 60.1 39 76.9
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.3e-07 60.1 39 74.4
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 1.3e-07 60.1 37 78.4
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.6e-07 59.7 39 74.4
BcaB05g25118 Brassica carinata HOM05D004131 ORTHO05D004778 1.6e-07 59.7 47 70.2
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.6e-07 59.7 42 69.0
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.6e-07 59.7 42 69.0
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 1.6e-07 59.7 42 69.0
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 1.6e-07 59.7 42 69.0
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 1.6e-07 59.7 42 69.0
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 2.1e-07 59.3 39 74.4
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 2.1e-07 59.3 39 71.8
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 2.1e-07 59.3 39 71.8
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.1e-07 59.3 39 71.8
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.1e-07 59.3 39 71.8
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.1e-07 59.3 39 71.8
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 2.1e-07 59.3 39 71.8
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 2.1e-07 59.3 39 71.8
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 2.1e-07 59.3 39 71.8
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 2.1e-07 59.3 39 74.4
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 2.1e-07 59.3 39 71.8
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 2.1e-07 59.3 39 74.4
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 2.8e-07 58.9 35 82.9
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 2.8e-07 58.9 65 49.2
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 2.8e-07 58.9 39 71.8
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 2.8e-07 58.9 37 78.4
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 2.8e-07 58.9 39 71.8
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 2.8e-07 58.9 39 74.4
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 2.8e-07 58.9 39 74.4
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 3.6e-07 58.5 32 90.6
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 3.6e-07 58.5 42 66.7
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 3.6e-07 58.5 39 74.4
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 4.8e-07 58.2 39 71.8
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 4.8e-07 58.2 39 71.8
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 4.8e-07 58.2 43 67.4
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 4.8e-07 58.2 39 71.8
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 4.8e-07 58.2 39 71.8
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 4.8e-07 58.2 39 69.2
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 4.8e-07 58.2 39 69.2
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 4.8e-07 58.2 39 71.8
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 6.2e-07 57.8 37 73.0
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 6.2e-07 57.8 39 71.8
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 6.2e-07 57.8 39 71.8
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 6.2e-07 57.8 39 71.8
BcaB05g25107 Brassica carinata HOM05D004131 ORTHO05D004778 6.2e-07 57.8 45 71.1
BcaB05g25109 Brassica carinata HOM05D004131 ORTHO05D004778 6.2e-07 57.8 45 71.1
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 6.2e-07 57.8 40 70.0
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 6.2e-07 57.8 37 75.7
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 6.2e-07 57.8 39 71.8
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 6.2e-07 57.8 37 73.0
BcaB05g25117 Brassica carinata HOM05D004131 ORTHO05D004778 8.1e-07 57.4 50 66.0
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 8.1e-07 57.4 39 71.8
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 8.1e-07 57.4 42 64.3
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 1.1e-06 57.0 39 69.2
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 1.1e-06 57.0 33 84.8
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 1.1e-06 57.0 33 84.8
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 1.1e-06 57.0 37 75.7
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 1.1e-06 57.0 42 64.3
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 1.1e-06 57.0 36 75.0
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.4e-06 56.6 37 70.3
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.4e-06 56.6 37 70.3
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 1.4e-06 56.6 39 69.2
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 1.4e-06 56.6 39 69.2
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 1.4e-06 56.6 39 69.2
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 1.4e-06 56.6 39 69.2
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 1.4e-06 56.6 39 69.2
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.8e-06 56.2 42 64.3
BcaB05g25110 Brassica carinata HOM05D004131 ORTHO05D004778 1.8e-06 56.2 43 72.1
BcaB05g25112 Brassica carinata HOM05D004131 ORTHO05D004778 1.8e-06 56.2 43 72.1
BcaB05g25113 Brassica carinata HOM05D004131 ORTHO05D004778 1.8e-06 56.2 43 72.1
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.8e-06 56.2 36 75.0
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.8e-06 56.2 44 63.6
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 1.8e-06 56.2 44 63.6
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 1.8e-06 56.2 39 71.8
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 1.8e-06 56.2 38 71.1
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 2.4e-06 55.8 39 69.2
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 2.4e-06 55.8 38 73.7
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 3.1e-06 55.5 38 71.1
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 3.1e-06 55.5 39 66.7
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 3.1e-06 55.5 39 66.7
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 3.1e-06 55.5 39 69.2
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 4.0e-06 55.1 39 69.2
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 4.0e-06 55.1 39 69.2
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 5.3e-06 54.7 39 66.7
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 5.3e-06 54.7 39 66.7
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 5.3e-06 54.7 39 69.2
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 5.3e-06 54.7 36 72.2
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 6.9e-06 54.3 39 66.7
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 9.0e-06 53.9 36 69.4
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 9.0e-06 53.9 39 66.7
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 9.0e-06 53.9 39 66.7
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 9.0e-06 53.9 35 71.4


User provided reference genes

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