Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07190 Brassica carinata HOM05D007341 ORTHO05D009075 2.3e-84 315.5 156 100.0
A07p27380 Brassica napus HOM05D007341 ORTHO05D009075 2.4e-76 288.9 156 93.6
BraA07t30379Z Brassica rapa HOM05D007341 ORTHO05D009075 3.1e-76 288.5 156 93.6
BcaC08g45393 Brassica carinata HOM05D007341 ORTHO05D009075 2.4e-73 278.9 157 91.1
C06p30240 Brassica napus HOM05D007341 ORTHO05D009075 2.4e-73 278.9 157 91.1
BolC6t38187H Brassica oleracea HOM05D007341 ORTHO05D009075 2.4e-73 278.9 157 91.1
CARHR072660 Cardamine hirsuta HOM05D007341 ORTHO05D009075 9.2e-73 276.9 156 87.8
Thhalv10019269m.g Eutrema salsugineum HOM05D007341 ORTHO05D009075 3.5e-72 275.0 159 89.9
Sp5g34040 Schrenkiella parvula HOM05D007341 ORTHO05D009075 4.7e-69 264.6 156 86.5
AT1G78995 Arabidopsis thaliana HOM05D007341 ORTHO05D009075 3.1e-68 261.9 160 83.8
Carub.0002s2586 Capsella rubella HOM05D007341 ORTHO05D009075 2.0e-67 259.2 158 85.4
AL2G39450 Arabidopsis lyrata HOM05D007341 ORTHO05D009075 6.2e-61 237.7 160 80.0
THA.LOC104808109 Tarenaya hassleriana HOM05D007341 ORTHO05D009075 1.8e-47 193.0 166 65.7
Cfa002160 Carpinus fangiana HOM05D007341 ORTHO05D009075 2.7e-40 169.1 168 54.8
CiPaw.01G092200 Carya illinoinensis HOM05D007341 ORTHO05D009075 2.3e-39 166.0 145 60.7
Haze_16246 Corylus avellana HOM05D007341 ORTHO05D009075 1.1e-38 163.7 168 54.8
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 1.9e-38 162.9 137 63.5
QL05p085130 Quercus lobata HOM05D007341 ORTHO05D009075 1.9e-38 162.9 185 51.4
Cc06_g16890 Coffea canephora HOM05D007341 ORTHO05D009075 2.5e-38 162.5 138 64.5
Eucgr.F04060 Eucalyptus grandis HOM05D007341 ORTHO05D009075 3.3e-38 162.2 138 63.8
Prupe.3G028000 Prunus persica HOM05D007341 ORTHO05D009075 3.3e-38 162.2 145 60.7
TWI12G0959 Tripterygium wilfordii HOM05D007341 ORTHO05D009075 3.3e-38 162.2 118 69.5
Gohir.A05G116700 Gossypium hirsutum HOM05D007341 ORTHO05D009075 7.4e-38 161.0 168 56.5
Gohir.D05G117600 Gossypium hirsutum HOM05D007341 ORTHO05D009075 2.2e-37 159.5 168 56.0
Gorai.009G121500 Gossypium raimondii HOM05D007341 ORTHO05D009075 2.2e-37 159.5 168 56.5
Sed0003722 Sechium edule HOM05D007341 ORTHO05D009075 4.8e-37 158.3 98 77.6
GSVIVG01029444001 Vitis vinifera HOM05D007341 ORTHO05D009075 4.8e-37 158.3 109 74.3
FvH4_6g36350 Fragaria vesca HOM05D007341 ORTHO05D009075 6.3e-37 157.9 167 53.9
FAN02G2832 Fragaria x ananassa HOM05D007341 ORTHO05D009075 6.3e-37 157.9 167 53.9
MELO3C019561.2 Cucumis melo HOM05D007341 ORTHO05D009075 1.4e-36 156.8 98 76.5
Thecc.06G049400 Theobroma cacao HOM05D007341 ORTHO05D009075 1.8e-36 156.4 167 56.9
CsaV3_3G018050 Cucumis sativus L. HOM05D007341 ORTHO05D009075 4.1e-36 155.2 94 79.8
Actinidia38822 Actinidia chinensis HOM05D007341 ORTHO05D009075 5.3e-36 154.8 126 63.5
Dinv20313 Davidia involucrata HOM05D007341 ORTHO05D009075 6.9e-36 154.5 138 63.0
Duzib235G0177 Durio zibethinus HOM05D007341 ORTHO05D009075 6.9e-36 154.5 171 55.0
FAN09G2851 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.2e-35 153.7 167 52.7
Nitab4.5_0000349g0220 Nicotiana tabacum HOM05D007341 ORTHO05D009075 1.2e-35 153.7 98 77.6
Sabra07G0002700 Salix brachista HOM05D007341 ORTHO05D009075 1.5e-35 153.3 178 51.7
CSS0015626 Camellia sinensis var. sinensis HOM05D007341 ORTHO05D009075 2.6e-35 152.5 156 55.8
Ciclev10029418m.g Citrus clementina HOM05D007341 ORTHO05D009075 2.6e-35 152.5 100 72.0
RcHm_v2.0_Chr2g0148351 Rosa chinensis HOM05D007341 ORTHO05D009075 2.6e-35 152.5 99 71.7
Lsat_1_v5_gn_9_114620 Lactuca sativa HOM05D007341 ORTHO05D009075 3.4e-35 152.1 172 50.6
Potri.007G003600 Populus trichocarpa HOM05D007341 ORTHO05D009075 4.5e-35 151.8 179 50.3
PGR102G3137 Punica granatum HOM05D007341 ORTHO05D009075 7.7e-35 151.0 134 61.9
ECA240G2002 Erigeron canadensis HOM05D007341 ORTHO05D009075 1.7e-34 149.8 127 61.4
HanXRQChr03g0072101 Helianthus annuus HOM05D007341 ORTHO05D009075 2.2e-34 149.4 101 71.3
PGSC0003DMG400019203 Solanum tuberosum HOM05D007341 ORTHO05D009075 2.2e-34 149.4 146 58.2
MD09G1169800 Malus domestica HOM05D007341 ORTHO05D009075 5.0e-34 148.3 150 54.7
Solyc10g086470.2 Solanum lycopersicum HOM05D007341 ORTHO05D009075 8.5e-34 147.5 144 58.3
Sopen10g035850 Solanum pennellii HOM05D007341 ORTHO05D009075 8.5e-34 147.5 144 58.3
TAR636G1203 Trochodendron aralioides HOM05D007341 ORTHO05D009075 1.1e-33 147.1 121 66.9
CANSAT01G1666 Cannabis sativa HOM05D007341 ORTHO05D009075 3.2e-33 145.6 105 67.6
Aqoxy7G02561 Aquilegia oxysepala HOM05D007341 ORTHO05D009075 9.4e-33 144.1 135 57.8
MSTRG.26115 Avicennia marina HOM05D007341 ORTHO05D009075 9.4e-33 144.1 137 59.1
AUR62025687 Chenopodium quinoa HOM05D007341 ORTHO05D009075 1.6e-32 143.3 127 59.1
Hma1.2p1_0422F.1_g150100 Hydrangea macrophylla HOM05D007341 ORTHO05D009075 3.6e-32 142.1 130 56.9
Lalb_Chr24g0392671 Lupinus albus HOM05D007341 ORTHO05D009075 4.6e-32 141.7 142 56.3
AUR62001305 Chenopodium quinoa HOM05D007341 ORTHO05D009075 1.0e-31 140.6 160 53.8
CDE05G1356 Ceratophyllum demersum HOM05D007341 ORTHO05D009075 1.4e-31 140.2 122 61.5
Migut.K00075 Erythranthe guttata HOM05D007341 ORTHO05D009075 3.0e-31 139.0 125 60.0
Mapoly0061s0126 Marchantia polymorpha HOM05D007341 ORTHO05D009075 3.9e-31 138.7 105 65.7
Pp3c15_22740 Physcomitrium patens HOM05D007341 ORTHO05D009075 5.1e-31 138.3 94 71.3
DCAR_027600 Daucus carota HOM05D007341 ORTHO05D009075 6.7e-31 137.9 151 53.6
EL10Ac7g18105 Beta vulgaris HOM05D007341 ORTHO05D009075 1.5e-30 136.7 126 56.3
Hund18551 Selenicereus undatus HOM05D007341 ORTHO05D009075 2.0e-30 136.3 139 55.4
unitig_748.g7237 Utricularia gibba HOM05D007341 ORTHO05D009075 2.0e-30 136.3 145 54.5
Phvul.005G082000 Phaseolus vulgaris HOM05D007341 ORTHO05D009075 2.5e-30 136.0 141 53.9
Glyma.15G000400 Glycine max HOM05D007341 ORTHO05D009075 3.3e-30 135.6 169 47.9
Aa31LG4G1990 Aethionema arabicum HOM05D007341 ORTHO05D009075 4.3e-30 135.2 139 61.9
Medtr6g004140 Medicago truncatula HOM05D007341 ORTHO05D009075 4.3e-30 135.2 139 54.0
HPP92_026441 Vanilla planifolia HOM05D007341 ORTHO05D009075 9.7e-30 134.0 157 54.8
ATR0626G096 Amborella trichopoda HOM05D007341 ORTHO05D009075 2.2e-29 132.9 112 63.4
Zm00001eb227230 Zea mays HOM05D007341 ORTHO05D009075 6.3e-29 131.3 122 59.0
C02p36120 Brassica napus HOM05D007341 ORTHO05D009075 1.4e-28 130.2 63 92.1
Os06g0704200 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 9.1e-28 127.5 118 61.0
DCAR_011722 Daucus carota HOM05D007341 ORTHO05D009075 5.9e-27 124.8 131 52.7
SMO232G0085 Selaginella moellendorffii HOM05D007341 ORTHO05D009075 1.4e-25 120.2 112 58.0
SGA_v2.0_scaffold94G28462 Striga asiatica HOM05D007341 ORTHO05D009075 1.4e-25 120.2 125 56.0
PSO170G4447 Papaver somniferum HOM05D007341 ORTHO05D009075 4.2e-25 118.6 125 53.6
PSO063G2737 Papaver somniferum HOM05D007341 ORTHO05D009075 2.7e-24 115.9 152 48.0
ClCG05G010440 Citrullus lanatus HOM05D007341 ORTHO05D009075 4.7e-24 115.2 81 70.4
FAN14G2925 Fragaria x ananassa HOM05D007341 ORTHO05D009075 4.7e-24 115.2 167 45.5
FAN14G4935 Fragaria x ananassa HOM05D007341 ORTHO05D009075 4.7e-24 115.2 167 45.5
Nitab4.5_0001911g0010 Nicotiana tabacum HOM05D007341 ORTHO05D009075 3.0e-23 112.5 170 47.1
Sabra14G0002900 Salix brachista HOM05D007341 ORTHO05D009075 7.4e-22 107.8 81 60.5
Cpa.g.sc4293.1 Carica papaya HOM05D007341 ORTHO05D009075 9.7e-22 107.5 129 51.9
Nn8g41280 Nelumbo nucifera HOM05D007341 ORTHO05D009075 6.3e-21 104.8 112 54.5
VMungo1080G1509 Vigna mungo HOM05D007341 ORTHO05D009075 6.3e-21 104.8 127 49.6
Sc16g0003760 Simmondsia chinensis HOM05D007341 ORTHO05D009075 9.1e-20 100.9 80 66.2
Peaxi162Scf00330g00029 Petunia axillaris HOM05D007341 ORTHO05D009075 2.6e-19 99.4 110 52.7
Oeu004021.1 Olea europaea HOM05D007341 ORTHO05D009075 7.2e-17 91.3 116 53.4
Os02g0138100 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 6.1e-16 88.2 76 56.6
Cre01.g000800 Chlamydomonas reinhardtii HOM05D007341 ORTHO05D009075 8.0e-16 87.8 123 41.5
Rhsim08G0252300 Rhododendron simsii HOM05D000912 ORTHO05D009075 3.9e-15 85.5 90 55.6
Psat6g000680 Pisum sativum HOM05D007341 ORTHO05D009075 5.7e-14 81.6 109 49.5
SalBow1G8719 Salvia bowleyana HOM05D007341 ORTHO05D009075 7.4e-14 81.3 111 49.5
vmacro18722 Vaccinium macrocarpon HOM05D007341 ORTHO05D009075 7.4e-14 81.3 137 44.5
Manes.06G177800 Manihot esculenta HOM05D007341 ORTHO05D009075 4.8e-13 78.6 136 39.7
MCO04G269 Micromonas commoda HOM05D007341 ORTHO05D009075 4.8e-13 78.6 127 37.0
SalBow1G7986 Salvia bowleyana HOM05D007341 ORTHO05D009075 8.2e-13 77.8 88 55.7
Lj9A544T49 Lonicera japonica HOM05D007341 ORTHO05D009075 3.1e-12 75.9 67 59.7
MBI13_g34919_MAGBIO Magnolia biondii HOM05D007341 ORTHO05D009075 4.1e-12 75.5 71 59.2
Ah.08g218010 Amaranthus hybridus HOM05D007341 ORTHO05D009075 3.5e-11 72.4 131 38.2
PRCOL_00000561 Prasinoderma coloniale HOM05D007341 ORTHO05D009075 3.5e-11 72.4 120 36.7
AagrBONN_evm.TU.Sc2ySwM_368.1307 Anthoceros agrestis HOM05D007341 ORTHO05D009075 4.5e-11 72.0 109 46.8
A02p22440 Brassica napus HOM05D031861 ORTHO05D009075 1.3e-10 70.5 98 52.0
BraA02t07248Z Brassica rapa HOM05D031861 ORTHO05D009075 1.7e-10 70.1 111 47.7
BolC2t09625H Brassica oleracea HOM05D031861 ORTHO05D009075 9.4e-09 64.3 42 81.0


User provided reference genes

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