Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 3.9e-213 744.6 389 100.0
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.1e-196 689.9 391 93.4
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 2.4e-194 682.2 419 87.6
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 4.1e-194 681.4 402 90.8
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 2.7e-190 668.7 424 86.1
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 1.8e-189 666.0 389 89.2
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 4.2e-183 644.8 414 85.7
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 4.4e-180 634.8 388 86.6
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 1.3e-179 633.3 409 82.6
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 1.2e-177 626.7 392 85.5
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 1.4e-175 619.8 392 83.4
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 4.2e-167 591.7 387 79.3
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 1.4e-157 560.1 389 79.2
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 1.4e-149 533.5 390 70.8
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 3.4e-132 475.7 400 64.0
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 7.1e-130 468.0 392 64.8
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 2.1e-129 466.5 395 61.8
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 6.0e-129 464.9 400 63.5
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 1.0e-128 464.2 389 62.5
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 1.9e-127 459.9 408 60.3
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 1.6e-126 456.8 376 64.9
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 1.1e-125 454.1 393 62.1
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 1.1e-125 454.1 392 62.2
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 3.1e-125 452.6 380 64.5
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 1.2e-124 450.7 399 61.4
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 1.5e-124 450.3 396 61.6
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 3.7e-123 445.7 410 61.5
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 1.4e-122 443.7 405 60.5
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 1.9e-122 443.4 408 58.6
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 2.4e-122 443.0 405 61.7
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 5.4e-122 441.8 399 62.2
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 9.2e-122 441.0 410 59.0
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 2.1e-121 439.9 410 59.0
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 3.0e-120 436.0 406 60.1
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 3.3e-119 432.6 385 62.6
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 1.6e-118 430.3 433 56.4
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 1.6e-118 430.3 381 61.2
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 8.1e-118 427.9 387 59.2
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 8.1e-118 427.9 387 59.9
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 1.8e-117 426.8 373 60.1
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 5.2e-117 425.2 391 60.1
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 1.1e-114 417.5 382 60.7
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 2.4e-114 416.4 382 61.3
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 4.6e-113 412.1 392 56.6
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 6.0e-113 411.8 398 58.3
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 1.3e-112 410.6 372 59.9
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 6.6e-112 408.3 381 58.8
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 1.9e-111 406.8 392 56.4
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 9.6e-111 404.4 381 58.8
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 9.6e-111 404.4 382 59.2
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 3.6e-110 402.5 409 57.2
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 3.6e-110 402.5 358 62.0
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 6.2e-110 401.7 395 56.5
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 5.3e-109 398.7 346 61.0
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 6.9e-109 398.3 391 56.3
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 1.5e-108 397.1 391 56.0
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 2.0e-108 396.7 350 60.3
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 3.4e-108 396.0 354 59.0
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 5.8e-108 395.2 335 62.7
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 1.3e-107 394.0 388 54.9
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 7.8e-105 384.8 346 58.7
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 8.7e-104 381.3 332 61.7
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 2.5e-103 379.8 370 54.9
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 1.1e-101 374.4 339 58.7
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 3.1e-101 372.9 383 52.0
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 2.2e-99 366.7 334 59.9
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 3.5e-97 359.4 403 50.9
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 1.0e-96 357.8 385 51.7
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 3.0e-96 356.3 307 61.6
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 1.1e-93 347.8 366 56.6
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 7.6e-92 341.7 274 65.0
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 2.9e-91 339.7 399 52.1
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 3.2e-90 336.3 351 54.7
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 9.0e-85 318.2 368 48.6
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 1.4e-82 310.8 312 55.8
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 3.3e-79 299.7 374 47.6
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 1.3e-78 297.7 234 65.4
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 1.2e-76 291.2 459 42.0
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 2.2e-75 287.0 214 68.2
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 2.1e-73 280.4 396 44.9
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 1.4e-72 277.7 315 48.3
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 2.5e-71 273.5 388 44.3
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 8.5e-67 258.5 271 53.1
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 1.4e-66 257.7 200 64.0
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 2.7e-65 253.4 369 43.6
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 1.0e-64 251.5 187 68.4
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 1.0e-64 251.5 327 44.3
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 6.3e-62 242.3 298 48.0
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 7.0e-61 238.8 187 67.9
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 9.4e-58 228.4 358 38.5
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 5.2e-56 222.6 373 38.6
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 9.7e-55 218.4 246 54.1
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 5.0e-43 179.5 216 49.1
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 3.6e-41 173.3 140 65.7
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 3.3e-34 150.2 118 68.6
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 1.5e-31 141.4 111 63.1
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 9.2e-29 132.1 124 57.3
Lj9A543T70 Lonicera japonica HOM05D007236 ORTHO05D009150 3.5e-28 130.2 99 66.7
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 5.9e-28 129.4 239 37.7
CANSAT01G0299 Cannabis sativa HOM05D007236 ORTHO05D009150 7.8e-28 129.0 103 63.1
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 7.8e-28 129.0 351 29.1
CSS0013667 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 7.5e-23 112.5 87 65.5
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 9.8e-23 112.1 142 47.2
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 1.7e-19 101.3 83 63.9
Haze_16199 Corylus avellana HOM05D007236 ORTHO05D009150 5.2e-16 89.7 111 46.8
Aa31sc24G50 Aethionema arabicum HOM05D002308 ORTHO05D002535 2.2e-14 84.3 213 31.5
MCO09G516 Micromonas commoda HOM05D007236 ORTHO05D009150 6.0e-12 76.3 382 24.3
Glyma.13G133400 Glycine max HOM05D001509 ORTHO05D001361 3.4e-07 60.5 215 26.5
THA.LOC104823250 Tarenaya hassleriana HOM05D001509 ORTHO05D001361 2.9e-06 57.4 223 23.3
Nitab4.5_0000499g0130 Nicotiana tabacum HOM05D007236 ORTHO05D009150 8.4e-06 55.8 47 53.2


User provided reference genes

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