Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 6.2e-58 227.3 116 100.0
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 4.8e-10 68.2 88 53.4
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 6.3e-10 67.8 88 53.4
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 1.1e-09 67.0 130 42.3
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 1.4e-09 66.6 88 52.3
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 1.4e-09 66.6 88 52.3
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 1.4e-09 66.6 88 52.3
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 1.4e-09 66.6 88 52.3
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.4e-09 66.6 88 52.3
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 1.4e-09 66.6 88 52.3
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 1.4e-09 66.6 88 50.0
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 1.8e-09 66.2 88 52.3
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 1.8e-09 66.2 88 52.3
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.1e-09 65.5 64 56.2
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 4.1e-09 65.1 88 51.1
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 4.1e-09 65.1 88 51.1
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 4.1e-09 65.1 87 49.4
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 9.1e-09 63.9 130 39.2
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 9.1e-09 63.9 130 37.7
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.2e-08 63.5 87 50.6
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 1.2e-08 63.5 87 49.4
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 1.6e-08 63.2 87 47.1
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 1.6e-08 63.2 87 48.3
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 2.0e-08 62.8 87 47.1
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 2.0e-08 62.8 87 47.1
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 2.7e-08 62.4 87 48.3
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.7e-08 62.4 87 46.0
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 2.7e-08 62.4 87 48.3
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 3.5e-08 62.0 87 48.3
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 3.5e-08 62.0 87 49.4
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 3.5e-08 62.0 87 47.1
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 4.5e-08 61.6 87 46.0
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 4.5e-08 61.6 87 46.0
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 4.5e-08 61.6 87 46.0
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 4.5e-08 61.6 87 46.0
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 4.5e-08 61.6 87 46.0
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 4.5e-08 61.6 87 46.0
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 4.5e-08 61.6 87 46.0
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 4.5e-08 61.6 143 39.2
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 5.9e-08 61.2 87 46.0
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 5.9e-08 61.2 87 48.3
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 5.9e-08 61.2 87 46.0
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 5.9e-08 61.2 87 46.0
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 5.9e-08 61.2 87 48.3
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 5.9e-08 61.2 87 48.3
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 5.9e-08 61.2 87 48.3
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 5.9e-08 61.2 87 48.3
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 5.9e-08 61.2 87 46.0
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 5.9e-08 61.2 87 46.0
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 7.7e-08 60.8 87 47.1
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 7.7e-08 60.8 87 48.3
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 7.7e-08 60.8 87 44.8
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 7.7e-08 60.8 87 44.8
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 7.7e-08 60.8 87 46.0
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.0e-07 60.5 87 47.1
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.0e-07 60.5 87 47.1
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 1.0e-07 60.5 87 48.3
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 1.3e-07 60.1 87 47.1
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 1.3e-07 60.1 87 44.8
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.3e-07 60.1 87 47.1
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.3e-07 60.1 87 47.1
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.3e-07 60.1 87 47.1
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.7e-07 59.7 87 44.8
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.7e-07 59.7 87 46.0
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 1.7e-07 59.7 87 44.8
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.7e-07 59.7 89 42.7
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.7e-07 59.7 87 43.7
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 1.7e-07 59.7 87 44.8
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 1.7e-07 59.7 130 40.0
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.7e-07 59.7 93 40.9
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.7e-07 59.7 87 44.8
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 2.3e-07 59.3 87 44.8
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 2.3e-07 59.3 87 44.8
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.3e-07 59.3 87 43.7
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.3e-07 59.3 87 44.8
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.3e-07 59.3 87 44.8
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 2.3e-07 59.3 87 44.8
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.9e-07 58.9 87 43.7
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.9e-07 58.9 87 44.8
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 2.9e-07 58.9 87 44.8
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 2.9e-07 58.9 87 46.0
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 2.9e-07 58.9 87 47.1
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 2.9e-07 58.9 87 46.0
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 2.9e-07 58.9 87 47.1
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 2.9e-07 58.9 87 43.7
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.9e-07 58.9 139 34.5
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 3.8e-07 58.5 87 44.8
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 3.8e-07 58.5 87 42.5
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.8e-07 58.5 87 42.5
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.8e-07 58.5 87 42.5
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.8e-07 58.5 87 42.5
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 3.8e-07 58.5 87 46.0
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 3.8e-07 58.5 87 43.7
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 3.8e-07 58.5 130 38.5
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 3.8e-07 58.5 87 42.5
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 3.8e-07 58.5 87 47.1
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 5.0e-07 58.2 130 39.2
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 5.0e-07 58.2 87 44.8
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 6.6e-07 57.8 85 47.1
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 6.6e-07 57.8 87 43.7
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 8.6e-07 57.4 87 42.5
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 8.6e-07 57.4 87 46.0
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 8.6e-07 57.4 96 44.8
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 1.1e-06 57.0 87 43.7
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 1.1e-06 57.0 87 44.8
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 1.1e-06 57.0 87 43.7
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 1.5e-06 56.6 128 36.7
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.9e-06 56.2 30 83.3
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 2.5e-06 55.8 130 33.8
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.5e-06 55.8 87 41.4
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 5.5e-06 54.7 90 42.2
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 9.5e-06 53.9 30 76.7


User provided reference genes

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