Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 4.3e-92 341.3 170 100.0
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 1.7e-43 179.9 104 87.5
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 1.7e-43 179.9 104 87.5
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 1.7e-43 179.9 104 87.5
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 4.9e-43 178.3 104 87.5
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 4.9e-43 178.3 104 87.5
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 4.3e-39 165.2 106 81.1
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.8e-37 159.8 107 76.6
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 2.3e-37 159.5 101 81.2
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 4.0e-37 158.7 101 80.2
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 1.2e-36 157.1 101 80.2
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 7.5e-36 154.5 101 79.2
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.7e-35 153.3 105 76.2
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 4.9e-35 151.8 101 79.2
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 3.2e-34 149.1 106 74.5
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 4.1e-34 148.7 108 74.1
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 2.3e-32 142.9 105 75.2
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 3.9e-32 142.1 104 74.0
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 3.9e-32 142.1 104 74.0
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 5.1e-32 141.7 104 74.0
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 5.1e-32 141.7 104 74.0
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 7.3e-31 137.9 103 73.8
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 5.1e-24 115.2 75 80.0
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.5e-23 113.6 108 63.0
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.5e-23 113.6 114 59.6
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 2.8e-22 109.4 98 62.2
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 2.8e-22 109.4 98 62.2
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 6.2e-22 108.2 99 62.6
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 8.1e-22 107.8 104 61.5
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 1.1e-21 107.5 98 61.2
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 1.4e-21 107.1 101 61.4
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 3.1e-21 105.9 98 60.2
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 4.0e-21 105.5 98 58.2
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 4.0e-21 105.5 98 58.2
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 5.2e-21 105.1 102 57.8
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 5.2e-21 105.1 98 57.1
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 5.2e-21 105.1 98 57.1
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 6.9e-21 104.8 99 58.6
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 8.9e-21 104.4 98 58.2
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 4.4e-20 102.1 102 56.9
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.3e-19 100.5 97 58.8
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.9e-19 99.4 102 53.9
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 6.4e-19 98.2 92 58.7
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 8.4e-19 97.8 92 59.8
Sp5g33520 Schrenkiella parvula HOM05D003098 ORTHO05D003634 8.4e-19 97.8 74 71.6
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 2.1e-17 93.2 109 56.9
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 1.3e-16 90.5 107 52.3
Carub.0002s2532 Capsella rubella HOM05D003098 ORTHO05D003634 7.3e-15 84.7 65 73.8
A07p27540 Brassica napus HOM05D003098 ORTHO05D003634 6.2e-14 81.6 51 76.5
CARHR071940 Cardamine hirsuta HOM05D003098 ORTHO05D003634 4.0e-13 79.0 74 63.5
BcaB03g16017 Brassica carinata HOM05D003098 ORTHO05D003634 9.0e-13 77.8 64 67.2
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 1.2e-12 77.4 93 48.4
AL2G38790 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 9.9e-12 74.3 70 65.7
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.3e-11 73.9 108 41.7
BcaB05g25139 Brassica carinata HOM05D003098 ORTHO05D003634 2.2e-11 73.2 139 39.6
BcaC08g47416 Brassica carinata HOM05D003098 ORTHO05D003634 2.2e-11 73.2 65 61.5
C06p52360 Brassica napus HOM05D003098 ORTHO05D003634 2.2e-11 73.2 65 61.5
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.2e-11 73.2 101 45.5
AT1G78420 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 3.8e-11 72.4 70 64.3
BolC6t38210H Brassica oleracea HOM05D003098 ORTHO05D003634 3.8e-11 72.4 48 72.9
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 3.8e-11 72.4 99 45.5
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 4.9e-11 72.0 101 41.6
BolC6t40256H Brassica oleracea HOM05D003098 ORTHO05D003634 1.1e-10 70.9 100 48.0
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.1e-10 70.9 105 42.9
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 1.1e-10 70.9 101 37.6
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.4e-10 70.5 105 41.9
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 2.4e-10 69.7 99 38.4
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 3.2e-10 69.3 107 41.1
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 4.2e-10 68.9 99 41.4
Thhalv10018644m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 4.2e-10 68.9 67 59.7
A02p22180 Brassica napus HOM05D003098 ORTHO05D003634 5.4e-10 68.6 127 36.2
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 5.4e-10 68.6 100 45.0
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 5.4e-10 68.6 98 45.9
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 9.3e-10 67.8 104 46.2
BcaC03g15812 Brassica carinata HOM05D003098 ORTHO05D003634 1.2e-09 67.4 133 39.1
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 1.2e-09 67.4 89 46.1
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.2e-09 67.4 96 41.7
BolC2t09574H Brassica oleracea HOM05D003098 ORTHO05D003634 1.6e-09 67.0 133 39.1
C05p15520 Brassica napus HOM05D003098 ORTHO05D003634 2.7e-09 66.2 104 42.3
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 2.7e-09 66.2 110 38.2
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 3.5e-09 65.9 110 40.9
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 3.5e-09 65.9 110 40.9
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 4.6e-09 65.5 122 39.3
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 4.6e-09 65.5 110 38.2
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 4.6e-09 65.5 99 41.4
C02p35590 Brassica napus HOM05D003098 ORTHO05D003634 6.0e-09 65.1 133 38.3
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 6.0e-09 65.1 107 38.3
BcaB07g34048 Brassica carinata HOM05D003098 ORTHO05D003634 7.9e-09 64.7 129 38.8
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 7.9e-09 64.7 94 43.6
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 7.9e-09 64.7 97 40.2
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 1.0e-08 64.3 95 42.1
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.3e-08 63.9 87 43.7
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.3e-08 63.9 100 42.0
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 1.8e-08 63.5 98 46.9
THA.LOC104813978 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 1.8e-08 63.5 78 51.3
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 3.0e-08 62.8 97 41.2
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 3.0e-08 62.8 95 41.1
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 3.9e-08 62.4 85 44.7
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.9e-08 62.4 96 41.7
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 3.9e-08 62.4 98 40.8
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 5.1e-08 62.0 116 35.3
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 5.1e-08 62.0 116 39.7
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 5.1e-08 62.0 92 40.2
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 6.7e-08 61.6 134 36.6
BcaC05g25664 Brassica carinata HOM05D003098 ORTHO05D003634 6.7e-08 61.6 152 31.6
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 6.7e-08 61.6 137 37.2
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 6.7e-08 61.6 90 42.2
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.7e-08 61.6 105 41.0
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 6.7e-08 61.6 105 41.0
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 6.7e-08 61.6 100 41.0
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 8.7e-08 61.2 120 37.5
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 8.7e-08 61.2 87 42.5
BolC5t30262H Brassica oleracea HOM05D003098 ORTHO05D003634 1.1e-07 60.8 104 40.4
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.1e-07 60.8 101 39.6
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.5e-07 60.5 102 40.2
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.5e-07 60.5 87 44.8
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 1.9e-07 60.1 92 38.0
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 1.9e-07 60.1 97 41.2
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.5e-07 59.7 93 43.0
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 2.5e-07 59.7 88 39.8
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 3.3e-07 59.3 102 42.2
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 4.3e-07 58.9 85 44.7
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 4.3e-07 58.9 85 44.7
Ciclev10020251m.g Citrus clementina HOM05D003098 ORTHO05D003634 4.3e-07 58.9 79 57.0
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 4.3e-07 58.9 97 40.2
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 5.6e-07 58.5 95 40.0
A06p13040 Brassica napus HOM05D003098 ORTHO05D003634 7.4e-07 58.2 110 38.2
BraA06t24463Z Brassica rapa HOM05D003098 ORTHO05D003634 7.4e-07 58.2 110 38.2
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 7.4e-07 58.2 85 43.5
Ca_03391_v3 Cicer arietinum L. HOM05D003098 ORTHO05D003634 7.4e-07 58.2 66 57.6
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 7.4e-07 58.2 97 38.1
BcaC08g45416 Brassica carinata HOM05D003098 ORTHO05D003634 9.6e-07 57.8 51 60.8
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 9.6e-07 57.8 100 38.0
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 9.6e-07 57.8 101 39.6
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.3e-06 57.4 117 38.5
DCAR_021056 Daucus carota HOM05D003098 ORTHO05D003634 1.3e-06 57.4 103 37.9
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 1.3e-06 57.4 123 37.4
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 1.3e-06 57.4 105 41.0
Hma1.2p1_0325F.1_g125970 Hydrangea macrophylla HOM05D004022 ORTHO05D004090 1.6e-06 57.0 52 61.5
vmacro12016 Vaccinium macrocarpon HOM05D003098 ORTHO05D003634 1.6e-06 57.0 66 51.5
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.1e-06 56.6 99 38.4
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 2.1e-06 56.6 108 37.0
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 2.8e-06 56.2 115 37.4
Glyma.13G259100 Glycine max HOM05D003098 ORTHO05D003634 2.8e-06 56.2 64 54.7
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 2.8e-06 56.2 91 39.6
A07p43680 Brassica napus HOM05D003098 ORTHO05D003634 3.7e-06 55.8 102 45.1
BraA07t31880Z Brassica rapa HOM05D003098 ORTHO05D003634 3.7e-06 55.8 102 45.1
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 3.7e-06 55.8 95 41.1
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.7e-06 55.8 95 40.0
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 3.7e-06 55.8 89 40.4
Medtr2g070630 Medicago truncatula HOM05D003098 ORTHO05D003634 3.7e-06 55.8 63 55.6
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 3.7e-06 55.8 103 37.9
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.8e-06 55.5 106 36.8
THA.LOC104812290 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 4.8e-06 55.5 77 45.5
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 6.2e-06 55.1 90 40.0
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 6.2e-06 55.1 98 41.8
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 6.2e-06 55.1 54 51.9
Glyma.15G249000 Glycine max HOM05D003098 ORTHO05D003634 8.1e-06 54.7 64 54.7
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 8.1e-06 54.7 88 36.4
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 8.1e-06 54.7 97 38.1


User provided reference genes

Program Settings