Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 0.0e+00 1319.7 824 100.0
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 1.0e-295 1020.0 875 73.1
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 1.5e-291 1006.1 878 75.3
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 1.5e-291 1006.1 878 75.3
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 2.6e-291 1005.4 878 75.2
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 3.8e-282 974.9 931 67.7
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 2.1e-280 969.1 876 74.8
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 4.9e-266 921.4 877 70.8
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 4.6e-264 914.8 877 70.4
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 1.5e-262 909.8 881 70.1
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 1.4e-260 903.3 877 70.0
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 3.5e-256 888.6 877 70.7
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 3.9e-255 885.2 877 70.2
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 1.6e-253 879.8 928 65.3
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 1.9e-241 839.7 877 59.1
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 5.0e-234 815.1 911 62.0
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 5.0e-218 761.9 870 64.0
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 1.9e-209 733.4 879 54.6
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 1.7e-202 710.3 878 55.7
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 3.3e-201 706.1 878 54.1
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 3.3e-201 706.1 859 54.4
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 5.2e-191 672.2 844 53.6
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 3.4e-174 616.3 875 50.2
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 7.8e-171 605.1 878 48.1
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 1.1e-169 601.3 873 46.2
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 1.1e-169 601.3 873 46.2
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 2.0e-166 590.5 878 44.2
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 3.4e-166 589.7 881 47.0
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 1.4e-164 584.3 883 46.2
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 9.3e-164 581.6 884 48.4
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 6.0e-163 578.9 876 48.4
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 1.7e-162 577.4 809 47.1
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 2.1e-160 570.5 886 48.2
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 8.1e-160 568.5 871 45.6
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 5.3e-159 565.8 880 45.9
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 3.4e-158 563.1 883 48.0
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 7.6e-158 562.0 867 43.9
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 1.7e-157 560.8 879 48.2
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.7e-157 560.8 871 45.5
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 3.8e-157 559.7 879 48.2
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 4.9e-157 559.3 879 48.2
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 4.9e-157 559.3 870 44.3
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 7.1e-156 555.4 876 47.8
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 2.7e-155 553.5 869 46.5
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 7.4e-153 545.4 878 47.3
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 6.2e-152 542.3 870 46.6
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 1.4e-151 541.2 870 42.9
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 3.5e-147 526.6 870 45.6
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 6.7e-146 522.3 837 44.3
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 1.1e-145 521.5 879 48.8
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 5.6e-145 519.2 878 44.3
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 6.2e-144 515.8 875 43.2
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 4.5e-142 509.6 878 42.3
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 1.3e-141 508.1 877 40.8
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 1.7e-141 507.7 873 40.4
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.2e-141 507.3 876 45.7
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.9e-141 506.9 884 45.8
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 1.4e-140 504.6 880 41.9
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 3.9e-138 496.5 867 43.4
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 1.9e-137 494.2 845 46.7
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.1e-135 488.4 856 43.5
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.9e-135 485.7 728 49.6
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.2e-134 485.0 856 42.3
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 1.2e-134 485.0 879 45.2
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 4.5e-134 483.0 877 41.5
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 5.0e-133 479.6 880 42.0
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 2.5e-132 477.2 910 41.8
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 5.5e-132 476.1 728 49.2
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 5.5e-132 476.1 827 45.3
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 7.9e-131 472.2 871 41.1
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.0e-130 471.9 871 46.2
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 6.7e-130 469.2 847 47.9
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 6.7e-130 469.2 847 47.9
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.1e-129 468.4 871 45.7
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 1.3e-128 464.9 829 40.2
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 2.4e-127 460.7 887 41.0
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 4.1e-127 459.9 871 42.1
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 3.4e-126 456.8 880 40.3
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 4.5e-126 456.4 880 40.5
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 8.5e-125 452.2 861 39.6
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 2.5e-124 450.7 870 42.3
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 4.7e-123 446.4 874 42.2
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 5.1e-122 443.0 882 41.3
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 4.8e-120 436.4 872 44.4
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.8e-120 436.4 626 46.0
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 2.4e-119 434.1 868 38.1
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 9.1e-119 432.2 868 37.9
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 2.2e-117 427.6 811 40.8
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 9.4e-116 422.2 775 42.3
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 1.5e-113 414.8 632 43.0
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 2.0e-113 414.5 889 38.6
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 3.3e-113 413.7 831 40.8
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 2.2e-112 411.0 875 40.2
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 4.8e-112 409.8 879 40.0
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 7.7e-110 402.5 897 40.4
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 2.2e-109 401.0 989 39.3
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 6.5e-109 399.4 827 38.7
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 1.9e-108 397.9 863 37.2
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 2.5e-108 397.5 891 37.4
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.5e-108 396.4 646 44.3
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 2.3e-106 391.0 846 37.4
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 5.7e-105 386.3 628 43.9
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 7.5e-105 386.0 745 39.7
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 1.2e-102 378.6 947 37.8
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 1.6e-102 378.3 842 36.3
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 5.5e-100 369.8 439 50.1
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 5.5e-100 369.8 597 42.7
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 1.0e-98 365.5 787 38.6
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 1.4e-98 365.2 881 38.8
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 9.8e-97 359.0 880 40.3
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 1.0e-93 349.0 877 40.1
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 1.9e-92 344.7 845 32.8
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.1e-91 341.3 808 35.6
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 1.0e-90 339.0 661 41.3
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 1.4e-90 338.6 866 37.0
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 2.9e-85 320.9 828 37.3
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 2.9e-85 320.9 828 33.6
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 1.6e-83 315.1 619 36.7
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 2.8e-83 314.3 750 36.8
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 4.9e-80 303.5 698 35.4
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.6e-73 281.2 613 35.2
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 2.7e-70 271.2 596 39.3
CARHR022630 Cardamine hirsuta HOM05D003496 ORTHO05D003909 3.0e-69 267.7 295 55.9
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 1.5e-68 265.4 259 62.9
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 1.5e-68 265.4 259 62.9
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 1.9e-68 265.0 818 31.8
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 9.5e-68 262.7 650 38.3
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 8.3e-64 249.6 632 36.4
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 4.6e-62 243.8 453 36.4
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.1e-60 239.2 277 50.9
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 3.6e-59 234.2 792 29.4
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 1.7e-56 225.3 544 34.2
RcHm_v2.0_Chr0c28g0501041 Rosa chinensis HOM05D003496 ORTHO05D003909 3.8e-56 224.2 352 42.3
RcHm_v2.0_Chr7g0243601 Rosa chinensis HOM05D003496 ORTHO05D003909 3.8e-56 224.2 352 42.3
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.8e-50 205.3 267 47.9
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 3.0e-45 188.0 463 34.3
Lalb_Chr10g0102391 Lupinus albus HOM05D003496 ORTHO05D003909 5.6e-44 183.7 217 62.2
CARHR022600 Cardamine hirsuta HOM05D003496 ORTHO05D003909 9.0e-42 176.4 235 49.4
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 1.2e-41 176.0 353 37.1
Actinidia10321 Actinidia chinensis HOM05D003496 ORTHO05D003909 2.2e-40 171.8 254 50.4
Solyc04g074120.4 Solanum lycopersicum HOM05D003496 ORTHO05D003909 3.8e-40 171.0 498 35.3
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.8e-37 162.2 309 38.8
BcaC05g26434 Brassica carinata HOM05D000415 ORTHO05D003909 1.5e-36 159.1 343 39.1
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 7.4e-36 156.8 361 41.8
SEGI_13289 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 3.7e-35 154.5 649 28.0
TPR.G7904 Trifolium pratense HOM05D003496 ORTHO05D003909 2.4e-34 151.8 187 50.3
BcaB03g15987 Brassica carinata HOM05D003496 ORTHO05D003909 4.9e-32 144.1 153 60.1
CAN.G1227.18 Capsicum annuum HOM05D003496 ORTHO05D003909 3.2e-31 141.4 107 70.1
FAN08G0731 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.2e-30 139.4 219 42.9
RcHm_v2.0_Chr0c28g0501031 Rosa chinensis HOM05D003496 ORTHO05D003909 3.5e-30 137.9 188 48.9
RcHm_v2.0_Chr7g0243591 Rosa chinensis HOM05D003496 ORTHO05D003909 3.5e-30 137.9 188 48.9
Glyma.14G121700 Glycine max HOM05D003496 ORTHO05D003909 1.1e-28 132.9 184 45.1
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 1.5e-28 132.5 227 52.4
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.5e-25 122.5 207 41.1
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 2.6e-25 121.7 374 31.6
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 6.5e-24 117.1 136 58.1
BcaC08g44544 Brassica carinata HOM05D003496 ORTHO05D003909 4.2e-23 114.4 101 70.3
RcHm_v2.0_Chr0c28g0500951 Rosa chinensis HOM05D003496 ORTHO05D003909 9.3e-23 113.2 145 44.8
FvH4_5g39261 Fragaria vesca HOM05D003496 ORTHO05D003909 2.7e-22 111.7 152 45.4
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 1.0e-21 109.8 622 26.4
CARHR022640 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.3e-21 109.4 99 60.6
SEGI_27299 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 2.8e-19 101.7 428 25.9
MSTRG.1477 Avicennia marina HOM05D003496 ORTHO05D003909 6.3e-19 100.5 103 55.3
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 4.1e-18 97.8 136 51.5
RcHm_v2.0_Chr0c28g0500891 Rosa chinensis HOM05D003496 ORTHO05D003909 4.5e-17 94.4 102 57.8
MBI16_g15384_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D003909 1.3e-16 92.8 116 51.7
VMungo0647G2412 Vigna mungo HOM05D003496 ORTHO05D003909 1.7e-16 92.4 85 61.2
SMO230G0003 Selaginella moellendorffii HOM05D003496 ORTHO05D003909 6.5e-16 90.5 381 27.6
Duzib093G0574 Durio zibethinus HOM05D003496 ORTHO05D003909 1.4e-15 89.4 357 28.9
BcaB06g27425 Brassica carinata HOM05D003496 ORTHO05D003909 5.5e-15 87.4 123 48.8
TPR.G7899 Trifolium pratense HOM05D003496 ORTHO05D003909 2.7e-14 85.1 101 51.5
VMungo0647G2290 Vigna mungo HOM05D003496 ORTHO05D003909 3.6e-14 84.7 98 45.9
Haze_22265 Corylus avellana HOM05D003496 ORTHO05D003909 3.3e-12 78.2 70 61.4
SHI03711 Sapria himalayana HOM05D003496 ORTHO05D003909 9.7e-12 76.6 102 56.9
Mapoly0040s0123 Marchantia polymorpha HOM05D003496 ORTHO05D003909 2.8e-11 75.1 598 22.9
RcHm_v2.0_Chr7g0227211 Rosa chinensis HOM05D003496 ORTHO05D003909 9.1e-10 70.1 71 57.7
MBI19_g10187_MAGBIO Magnolia biondii HOM05D020163 ORTHO05D003909 1.0e-08 66.6 95 47.4
Cc02_g10170 Coffea canephora HOM05D003496 ORTHO05D003909 2.9e-08 65.1 85 48.2
MBI02_g14193_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D003909 5.0e-08 64.3 66 54.5
MBI08_g24353_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D030050 6.5e-08 63.9 79 49.4
TPR.G16743 Trifolium pratense HOM05D003496 ORTHO05D003909 1.4e-07 62.8 55 58.2
CBR_g45286 Chara braunii HOM05D003496 ORTHO05D003909 5.5e-07 60.8 90 34.4
MBI05_g14901_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D030050 1.2e-06 59.7 79 45.6
MBI05_g41336_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D030050 4.7e-06 57.8 79 48.1
RcHm_v2.0_Chr7g0243501 Rosa chinensis HOM05D003496 ORTHO05D003909 6.1e-06 57.4 55 54.5
Aa31sc26G120 Aethionema arabicum HOM05D003496 ORTHO05D003909 7.9e-06 57.0 125 36.0


User provided reference genes

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