Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-157 558.9 334 100.0
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 4.5e-133 478.4 354 86.7
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 4.1e-126 455.3 354 83.9
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 9.7e-120 434.1 351 82.6
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 9.7e-120 434.1 351 82.6
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 9.7e-120 434.1 351 82.6
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 3.7e-119 432.2 336 76.2
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 2.4e-118 429.5 349 81.7
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.0e-117 426.4 343 81.3
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-117 426.0 338 75.4
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 2.6e-117 426.0 338 75.4
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 2.6e-117 426.0 338 75.4
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.8e-113 413.3 352 79.0
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 1.5e-112 410.2 354 78.0
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 2.2e-111 406.4 336 77.1
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 6.3e-111 404.8 335 78.5
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 7.0e-110 401.4 346 78.3
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 2.6e-109 399.4 356 76.4
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 1.6e-106 390.2 339 74.6
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 1.4e-105 387.1 339 75.2
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 2.3e-105 386.3 337 74.8
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 4.0e-105 385.6 337 73.9
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 8.8e-105 384.4 337 73.9
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 5.3e-102 375.2 336 66.7
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.2e-80 304.3 342 61.4
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 2.9e-79 299.7 345 54.8
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 4.3e-75 285.8 343 57.7
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 4.4e-72 275.8 342 57.3
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.3e-71 274.2 345 54.5
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 3.7e-71 272.7 339 56.0
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 8.3e-71 271.6 336 53.6
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.9e-70 270.4 341 56.9
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 2.7e-69 266.5 338 53.6
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 8.6e-68 261.5 330 58.8
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 8.1e-66 255.0 343 54.5
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 4.9e-63 245.7 337 50.7
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 4.9e-63 245.7 337 50.7
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 4.9e-63 245.7 337 50.7
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 1.4e-62 244.2 366 50.5
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 4.1e-62 242.7 337 51.9
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 7.1e-62 241.9 360 46.1
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 7.1e-62 241.9 369 50.1
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.7e-61 240.0 364 46.2
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 2.7e-61 240.0 346 45.1
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 7.8e-61 238.4 332 47.6
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.3e-60 236.9 351 45.3
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 3.0e-60 236.5 350 49.1
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 1.9e-59 233.8 355 45.1
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 4.3e-59 232.6 350 50.3
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 5.6e-59 232.3 364 45.6
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 7.3e-59 231.9 348 47.1
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.2e-58 231.1 364 45.1
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.6e-58 230.7 343 47.5
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 2.1e-58 230.3 356 46.3
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 3.6e-58 229.6 363 46.0
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 4.7e-58 229.2 366 45.4
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 6.2e-58 228.8 363 45.5
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 8.1e-58 228.4 333 46.8
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 1.1e-57 228.0 376 43.6
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 1.1e-57 228.0 373 44.5
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 1.4e-57 227.6 333 45.9
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.4e-57 227.6 329 49.8
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 2.3e-57 226.9 333 44.4
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.0e-57 226.1 342 46.8
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 4.0e-57 226.1 372 46.2
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 6.8e-57 225.3 363 44.9
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 1.2e-56 224.6 343 44.9
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.6e-56 223.4 368 42.9
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 4.4e-56 222.6 366 46.7
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.3e-55 221.1 339 43.7
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 1.7e-55 220.7 333 43.8
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.7e-55 220.7 329 45.3
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 2.9e-55 219.9 361 45.7
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 2.9e-55 219.9 363 43.0
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 4.9e-55 219.2 347 46.7
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 6.4e-55 218.8 349 47.0
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 8.4e-55 218.4 356 42.1
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.4e-54 217.6 346 48.3
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.9e-54 217.2 328 44.5
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.9e-54 217.2 341 43.7
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 1.9e-54 217.2 336 44.9
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 7.1e-54 215.3 340 45.9
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 9.2e-54 214.9 342 45.9
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 1.6e-53 214.2 368 44.8
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 3.5e-53 213.0 337 46.0
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 4.6e-53 212.6 342 45.6
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.0e-52 211.5 340 47.9
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 1.0e-52 211.5 371 41.8
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 1.7e-52 210.7 361 46.5
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 2.3e-52 210.3 367 44.4
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 2.3e-52 210.3 369 42.3
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 5.1e-52 209.1 346 53.8
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 1.5e-51 207.6 342 50.6
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 1.5e-51 207.6 359 42.3
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 3.3e-51 206.5 371 45.6
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 4.3e-51 206.1 333 47.1
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 5.6e-51 205.7 337 42.7
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 2.8e-50 203.4 370 43.0
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 4.7e-50 202.6 369 44.7
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 8.1e-50 201.8 322 52.5
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.8e-49 200.7 354 43.5
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 6.9e-49 198.7 354 45.2
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.2e-48 198.0 343 39.7
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 2.0e-48 197.2 352 40.9
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 4.4e-48 196.1 349 40.4
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 7.6e-48 195.3 357 42.6
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 7.6e-48 195.3 351 40.2
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 7.6e-48 195.3 347 51.6
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 8.4e-47 191.8 360 42.2
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.9e-46 190.7 332 44.0
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 2.4e-46 190.3 329 43.8
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 9.3e-46 188.3 336 42.9
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.6e-45 187.6 325 40.9
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.7e-45 186.8 327 42.2
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 5.1e-44 182.6 369 46.1
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.1e-43 181.4 316 45.3
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.5e-43 181.0 341 42.5
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 3.3e-43 179.9 345 43.8
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.6e-42 177.6 310 43.2
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 2.8e-42 176.8 340 43.2
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 3.6e-42 176.4 278 45.7
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 3.6e-42 176.4 322 41.3
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.4e-41 174.5 329 40.1
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.8e-41 174.1 179 54.7
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.2e-40 171.4 337 43.3
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 1.5e-40 171.0 376 40.4
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 3.4e-40 169.9 265 43.4
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 3.4e-40 169.9 332 45.5
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 5.8e-40 169.1 349 43.0
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 5.8e-40 169.1 349 41.0
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 5.8e-40 169.1 339 44.5
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 1.3e-39 167.9 360 36.7
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 1.7e-39 167.5 355 36.3
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 1.7e-39 167.5 298 44.6
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 2.2e-39 167.2 350 45.1
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 3.8e-39 166.4 184 53.8
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 8.4e-39 165.2 116 77.6
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 2.4e-38 163.7 349 43.3
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 1.2e-37 161.4 172 53.5
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 4.6e-37 159.5 354 39.5
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 1.0e-36 158.3 328 35.1
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 1.8e-36 157.5 346 36.1
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 3.0e-36 156.8 349 38.1
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.8e-33 147.5 338 39.9
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 4.0e-33 146.4 337 39.2
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 4.9e-31 139.4 297 41.4
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 4.9e-31 139.4 320 35.3
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.9e-30 137.5 352 32.4
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 7.1e-30 135.6 229 41.5
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 2.1e-29 134.0 255 39.6
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 2.7e-29 133.7 355 37.7
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 1.0e-28 131.7 322 36.3
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.3e-28 131.3 416 31.2
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.3e-28 131.3 401 30.9
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 2.3e-28 130.6 207 43.5
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 1.5e-27 127.9 307 45.3
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 9.6e-27 125.2 325 36.9
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 2.4e-25 120.6 374 29.9
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 1.2e-24 118.2 352 42.9
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.2e-24 118.2 335 34.6
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 7.6e-24 115.5 343 32.9
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 1.7e-23 114.4 346 44.2
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 1.0e-20 105.1 250 33.2
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.9e-20 103.2 326 36.2
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 5.1e-20 102.8 171 40.4
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 2.1e-18 97.4 343 45.8
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.5e-16 91.3 358 41.6
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 6.1e-13 79.3 95 49.5
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 2.8e-10 70.5 51 64.7
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 2.8e-10 70.5 51 64.7
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 4.1e-09 66.6 187 32.6
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 7.7e-08 62.4 93 45.2
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 6.5e-07 59.3 217 28.6
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.4e-06 58.2 166 36.7
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.9e-06 57.8 119 35.3


User provided reference genes

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