Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07111 Brassica carinata HOM05D006879 ORTHO05D008452 1.9e-59 232.3 113 100.0
C06p31190 Brassica napus HOM05D006879 ORTHO05D008452 7.9e-58 226.9 113 97.3
BcaC08g45472 Brassica carinata HOM05D006879 ORTHO05D008452 1.0e-57 226.5 113 96.5
BolC6t38260H Brassica oleracea HOM05D006879 ORTHO05D008452 1.0e-57 226.5 113 96.5
BraA07t30441Z Brassica rapa HOM05D006879 ORTHO05D008452 1.8e-57 225.7 113 96.5
A07p27940 Brassica napus HOM05D006879 ORTHO05D008452 5.2e-57 224.2 113 95.6
AL2G37750 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 1.0e-49 199.9 112 87.5
AT1G77540 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 3.0e-49 198.4 112 85.7
CARHR071070 Cardamine hirsuta HOM05D006879 ORTHO05D008452 1.5e-48 196.1 112 85.7
Thhalv10019334m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 2.0e-48 195.7 113 87.6
Sp5g32720 Schrenkiella parvula HOM05D006879 ORTHO05D008452 4.4e-48 194.5 112 84.8
Carub.0002s2444 Capsella rubella HOM05D006879 ORTHO05D008452 4.5e-45 184.5 101 87.1
Aa31LG7G5750 Aethionema arabicum HOM05D006879 ORTHO05D008452 3.6e-42 174.9 109 76.1
Thhalv10009164m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 3.6e-42 174.9 106 79.2
Sp1g19330 Schrenkiella parvula HOM05D006879 ORTHO05D008452 4.7e-42 174.5 106 78.3
Carub.0001s2123 Capsella rubella HOM05D006879 ORTHO05D008452 6.1e-42 174.1 107 76.6
AT1G21770 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 1.8e-41 172.6 108 76.9
QL09p034330 Quercus lobata HOM05D006879 ORTHO05D008452 5.2e-41 171.0 114 72.8
QL09p034374 Quercus lobata HOM05D006879 ORTHO05D008452 5.2e-41 171.0 114 72.8
Aa31LG4G7630 Aethionema arabicum HOM05D006879 ORTHO05D008452 8.8e-41 170.2 103 76.7
BcaC05g26099 Brassica carinata HOM05D006879 ORTHO05D008452 1.2e-40 169.9 107 77.6
Cfa016025 Carpinus fangiana HOM05D006879 ORTHO05D008452 1.2e-40 169.9 107 73.8
Duzib041G0788 Durio zibethinus HOM05D006879 ORTHO05D008452 4.4e-40 167.9 111 70.3
AL1G34970 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 5.7e-40 167.5 107 74.8
Potri.005G178501 Populus trichocarpa HOM05D006879 ORTHO05D008452 9.8e-40 166.8 113 70.8
Manes.02G164300 Manihot esculenta HOM05D006879 ORTHO05D008452 2.2e-39 165.6 111 68.5
Haze_00431 Corylus avellana HOM05D000586 ORTHO05D008452 2.8e-39 165.2 100 77.0
FAN20G0093 Fragaria x ananassa HOM05D006879 ORTHO05D008452 2.8e-39 165.2 113 70.8
Thecc.08G126700 Theobroma cacao HOM05D006879 ORTHO05D008452 2.8e-39 165.2 111 69.4
BcaB07g32176 Brassica carinata HOM05D006879 ORTHO05D008452 3.7e-39 164.9 107 75.7
THA.LOC104813659 Tarenaya hassleriana HOM05D006879 ORTHO05D008452 3.7e-39 164.9 101 77.2
BolC5t30777H Brassica oleracea HOM05D006879 ORTHO05D008452 4.8e-39 164.5 107 75.7
FvH4_2g27080 Fragaria vesca HOM05D006879 ORTHO05D008452 6.3e-39 164.1 113 69.9
A06p17880 Brassica napus HOM05D006879 ORTHO05D008452 1.1e-38 163.3 107 75.7
BraA06t24878Z Brassica rapa HOM05D006879 ORTHO05D008452 1.1e-38 163.3 107 75.7
Ciclev10002899m.g Citrus clementina HOM05D006879 ORTHO05D008452 1.1e-38 163.3 101 74.3
MD15G1347100 Malus domestica HOM05D006879 ORTHO05D008452 1.1e-38 163.3 114 71.1
FAN24G0949 Fragaria x ananassa HOM05D006879 ORTHO05D008452 2.4e-38 162.2 113 69.0
PGR083G2398 Punica granatum HOM05D006879 ORTHO05D008452 3.1e-38 161.8 112 65.2
C05p20780 Brassica napus HOM05D006879 ORTHO05D008452 4.1e-38 161.4 107 75.7
CsaV3_4G028290 Cucumis sativus L. HOM05D006879 ORTHO05D008452 4.1e-38 161.4 112 63.4
Solyc08g067800.3 Solanum lycopersicum HOM05D006879 ORTHO05D008452 4.1e-38 161.4 103 71.8
Gorai.002G222300 Gossypium raimondii HOM05D006879 ORTHO05D008452 5.4e-38 161.0 111 68.5
Sopen08g021740 Solanum pennellii HOM05D006879 ORTHO05D008452 7.0e-38 160.6 103 70.9
MELO3C010476.2 Cucumis melo HOM05D006879 ORTHO05D008452 9.1e-38 160.2 112 63.4
Gohir.D01G180300 Gossypium hirsutum HOM05D006879 ORTHO05D008452 9.1e-38 160.2 111 67.6
CSS0011792 Camellia sinensis var. sinensis HOM05D006879 ORTHO05D008452 1.2e-37 159.8 101 71.3
Aqoxy6G00233 Aquilegia oxysepala HOM05D006879 ORTHO05D008452 1.6e-37 159.5 107 68.2
Atru.chr13.1490 Acer truncatum HOM05D006879 ORTHO05D008452 2.0e-37 159.1 105 73.3
Gohir.A01G189200 Gossypium hirsutum HOM05D006879 ORTHO05D008452 2.0e-37 159.1 109 67.9
RcHm_v2.0_Chr6g0295961 Rosa chinensis HOM05D006879 ORTHO05D008452 2.7e-37 158.7 99 75.8
COL.COLO4_03398 Corchorus olitorius HOM05D006879 ORTHO05D008452 4.5e-37 157.9 112 67.0
Prupe.1G494800 Prunus persica HOM05D006879 ORTHO05D008452 1.3e-36 156.4 109 69.7
TWI32G0821 Tripterygium wilfordii HOM05D006879 ORTHO05D008452 1.3e-36 156.4 99 73.7
HanXRQChr03g0088981 Helianthus annuus HOM05D006879 ORTHO05D008452 1.7e-36 156.0 113 68.1
Sed0023358 Sechium edule HOM05D006879 ORTHO05D008452 2.2e-36 155.6 113 61.9
CDE07G0981 Ceratophyllum demersum HOM05D006879 ORTHO05D008452 5.0e-36 154.5 102 68.6
ClCG11G015720 Citrullus lanatus HOM05D006879 ORTHO05D008452 6.5e-36 154.1 125 58.4
Lsat_1_v5_gn_6_93360 Lactuca sativa HOM05D006879 ORTHO05D008452 6.5e-36 154.1 113 66.4
Cc10_g12010 Coffea canephora HOM05D006879 ORTHO05D008452 8.5e-36 153.7 112 67.9
Nitab4.5_0005583g0080 Nicotiana tabacum HOM05D006879 ORTHO05D008452 8.5e-36 153.7 111 70.3
Hund17297 Selenicereus undatus HOM05D006879 ORTHO05D008452 1.1e-35 153.3 111 65.8
CiPaw.06G031600 Carya illinoinensis HOM05D006879 ORTHO05D008452 1.5e-35 152.9 112 64.3
Dinv07211 Davidia involucrata HOM05D006879 ORTHO05D008452 1.5e-35 152.9 101 68.3
Dinv27305 Davidia involucrata HOM05D006879 ORTHO05D008452 1.9e-35 152.5 113 63.7
Hma1.2p1_0054F.1_g031040 Hydrangea macrophylla HOM05D006879 ORTHO05D008452 1.9e-35 152.5 111 64.0
ECA240G3722 Erigeron canadensis HOM05D006879 ORTHO05D008452 2.5e-35 152.1 113 66.4
Sc02g0005010 Simmondsia chinensis HOM05D006879 ORTHO05D008452 2.5e-35 152.1 112 62.5
VMungo0647G0471 Vigna mungo HOM05D006879 ORTHO05D008452 2.5e-35 152.1 113 67.3
CAN.G21.5 Capsicum annuum HOM05D006879 ORTHO05D008452 3.2e-35 151.8 102 69.6
Nn5g28321 Nelumbo nucifera HOM05D006879 ORTHO05D008452 3.2e-35 151.8 103 65.0
Eucgr.F03793 Eucalyptus grandis HOM05D006879 ORTHO05D008452 5.5e-35 151.0 112 62.5
Actinidia03466 Actinidia chinensis HOM05D006879 ORTHO05D008452 7.2e-35 150.6 113 66.4
AUR62014329 Chenopodium quinoa HOM05D006879 ORTHO05D008452 9.5e-35 150.2 117 62.4
AUR62019072 Chenopodium quinoa HOM05D006879 ORTHO05D008452 1.2e-34 149.8 117 62.4
Lj1g0005641 Lotus japonicus HOM05D006879 ORTHO05D008452 1.2e-34 149.8 113 61.9
Nitab4.5_0004334g0040 Nicotiana tabacum HOM05D006879 ORTHO05D008452 1.6e-34 149.4 112 67.0
Medtr3g088570 Medicago truncatula HOM05D006879 ORTHO05D008452 2.8e-34 148.7 107 65.4
Phvul.008G160300 Phaseolus vulgaris HOM05D006879 ORTHO05D008452 3.6e-34 148.3 97 72.2
arahy.Tifrunner.gnm1.ann1.0SZ2NS Arachis hypogaea HOM05D006879 ORTHO05D008452 4.7e-34 147.9 91 71.4
arahy.Tifrunner.gnm1.ann1.61DA9N Arachis hypogaea HOM05D006879 ORTHO05D008452 4.7e-34 147.9 91 71.4
arahy.Tifrunner.gnm1.ann1.GV74HV Arachis hypogaea HOM05D006879 ORTHO05D008452 4.7e-34 147.9 91 71.4
MSTRG.25382 Avicennia marina HOM05D006879 ORTHO05D008452 8.0e-34 147.1 105 66.7
Glyma.14G151700 Glycine max HOM05D006879 ORTHO05D008452 8.0e-34 147.1 100 69.0
Psat5g086200 Pisum sativum HOM05D006879 ORTHO05D008452 8.0e-34 147.1 99 71.7
PSO528G0112 Papaver somniferum HOM05D006879 ORTHO05D008452 4.0e-33 144.8 112 60.7
EL10Ac1g01022 Beta vulgaris HOM05D006879 ORTHO05D008452 6.8e-33 144.1 103 65.0
TAR628G0734 Trochodendron aralioides HOM05D006879 ORTHO05D008452 6.8e-33 144.1 92 69.6
FAN15G3590 Fragaria x ananassa HOM05D006879 ORTHO05D008452 8.8e-33 143.7 148 53.4
Lalb_Chr11g0066061 Lupinus albus HOM05D006879 ORTHO05D008452 2.6e-32 142.1 99 65.7
Ca_28182_v3 Cicer arietinum L. HOM05D006879 ORTHO05D008452 1.3e-31 139.8 97 67.0
Migut.C01128 Erythranthe guttata HOM05D006879 ORTHO05D008452 1.7e-31 139.4 101 63.4
PSO170G0506 Papaver somniferum HOM05D006879 ORTHO05D008452 1.7e-31 139.4 112 60.7
CANSAT56G2034 Cannabis sativa HOM05D006879 ORTHO05D008452 2.8e-31 138.7 120 58.3
ATR0584G146 Amborella trichopoda HOM05D006879 ORTHO05D008452 8.3e-31 137.1 91 69.2
SGA_v2.0_scaffold52G18964 Striga asiatica HOM05D006879 ORTHO05D008452 3.5e-29 131.7 109 60.6
CAN.G21.4 Capsicum annuum HOM05D006879 ORTHO05D008452 1.9e-27 125.9 102 55.9
vmacro00838 Vaccinium macrocarpon HOM05D006879 ORTHO05D008452 4.3e-27 124.8 77 74.0
Cpa.g.sc418.6 Carica papaya HOM05D006879 ORTHO05D008452 1.6e-26 122.9 89 68.5
RhsimUnG0092300 Rhododendron simsii HOM05D000586 ORTHO05D008452 8.0e-26 120.6 77 71.4
TPR.G20905 Trifolium pratense HOM05D006879 ORTHO05D008452 1.0e-25 120.2 81 70.4
GSVIVG01008857001 Vitis vinifera HOM05D006879 ORTHO05D008452 5.7e-24 114.4 68 79.4
Zm00001eb082730 Zea mays HOM05D006879 ORTHO05D008452 1.7e-23 112.8 111 51.4
Pp3c12_9490 Physcomitrium patens HOM05D006879 ORTHO05D008452 1.4e-22 109.8 114 50.9
Oeu059437.1 Olea europaea HOM05D006879 ORTHO05D008452 1.8e-22 109.4 68 69.1
Ah.05g171050 Amaranthus hybridus HOM05D006879 ORTHO05D008452 2.4e-22 109.0 80 66.2
Peaxi162Scf00332g00015 Petunia axillaris HOM05D006879 ORTHO05D008452 5.0e-20 101.3 79 60.8
HanXRQChr01g0005251 Helianthus annuus HOM05D006879 ORTHO05D008452 9.5e-19 97.1 74 63.5
SMO146G0286 Selaginella moellendorffii HOM05D006879 ORTHO05D008452 1.2e-18 96.7 92 47.8
HanXRQChr04g0101301 Helianthus annuus HOM05D006879 ORTHO05D008452 1.6e-18 96.3 74 64.9
Mapoly0075s0062 Marchantia polymorpha HOM05D006879 ORTHO05D008452 3.6e-18 95.1 114 41.2
SEGI_19819 Sequoiadendron giganteum HOM05D006879 ORTHO05D008452 1.1e-17 93.6 85 54.1
AagrBONN_evm.TU.Sc2ySwM_117.2168 Anthoceros agrestis HOM05D006879 ORTHO05D008452 2.9e-15 85.5 94 45.7
Os04g0431300 Oryza sativa ssp. japonica HOM05D006879 ORTHO05D008452 8.3e-15 84.0 62 58.1
CBR_g36233 Chara braunii HOM05D006879 ORTHO05D008452 1.9e-11 72.8 59 54.2
Eucgr.H03925 Eucalyptus grandis HOM05D006879 ORTHO05D008452 7.3e-11 70.9 61 54.1
Eucgr.H03927 Eucalyptus grandis HOM05D006879 ORTHO05D008452 2.8e-10 68.9 88 43.2
HanXRQChr09g0244451 Helianthus annuus HOM05D006879 ORTHO05D008452 8.1e-10 67.4 44 70.5
MCO09G076 Micromonas commoda HOM05D006879 ORTHO05D008452 2.2e-07 59.3 67 47.8


User provided reference genes

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