Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 2.0e-121 439.1 226 100.0
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 1.7e-99 366.3 226 85.8
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 1.6e-81 306.6 213 78.4
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 4.6e-81 305.1 213 78.4
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 2.3e-80 302.8 213 77.0
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 2.3e-80 302.8 213 77.0
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 3.2e-74 282.3 221 68.8
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 5.1e-72 275.0 215 68.8
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 2.1e-70 269.6 218 67.0
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 4.8e-70 268.5 219 66.2
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 1.7e-67 260.0 217 64.5
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 1.2e-65 253.8 218 63.3
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 1.0e-56 224.2 237 56.5
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 1.5e-55 220.3 211 55.5
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 5.1e-48 195.3 213 52.1
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 5.1e-48 195.3 212 49.5
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 1.5e-47 193.7 212 51.4
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 2.8e-46 189.5 213 51.2
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 2.8e-46 189.5 216 50.9
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 3.7e-46 189.1 208 50.0
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 4.8e-46 188.7 212 49.5
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 4.1e-45 185.7 210 49.0
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 4.1e-45 185.7 210 48.1
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.2e-44 184.1 214 48.6
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.6e-44 183.0 210 49.0
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 3.4e-44 182.6 211 49.8
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 4.5e-44 182.2 208 47.6
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 1.0e-43 181.0 210 48.6
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.7e-43 180.3 215 46.5
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 2.2e-43 179.9 211 48.8
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 3.8e-43 179.1 223 47.5
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 6.5e-43 178.3 211 47.9
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 1.4e-42 177.2 213 46.9
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 1.9e-42 176.8 214 46.7
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 2.5e-42 176.4 212 49.1
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 5.5e-42 175.3 216 44.9
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 7.2e-42 174.9 126 65.9
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 7.2e-42 174.9 214 46.3
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 9.4e-42 174.5 224 48.2
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 2.1e-41 173.3 211 46.9
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 2.7e-41 172.9 210 45.7
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 3.6e-41 172.6 218 46.3
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 3.6e-41 172.6 223 42.6
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 7.9e-41 171.4 223 42.6
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 7.9e-41 171.4 214 44.9
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 7.9e-41 171.4 211 46.4
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 7.9e-41 171.4 213 43.7
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.0e-40 171.0 220 42.3
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 1.8e-40 170.2 209 44.0
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 3.0e-40 169.5 212 45.3
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 3.9e-40 169.1 227 44.1
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 5.1e-40 168.7 207 47.3
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 6.7e-40 168.3 210 45.7
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 6.7e-40 168.3 214 46.3
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 6.7e-40 168.3 151 57.6
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 8.8e-40 167.9 125 63.2
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 8.8e-40 167.9 224 46.9
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 8.8e-40 167.9 209 46.9
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 8.8e-40 167.9 209 47.8
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 1.1e-39 167.5 209 45.0
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 1.1e-39 167.5 212 44.8
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 2.0e-39 166.8 209 45.5
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 2.0e-39 166.8 211 45.0
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 2.5e-39 166.4 219 42.5
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 3.3e-39 166.0 220 45.5
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 7.4e-39 164.9 213 45.5
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 9.7e-39 164.5 126 62.7
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 2.8e-38 162.9 250 41.6
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 3.7e-38 162.5 214 44.9
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 8.2e-38 161.4 126 61.9
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 1.8e-37 160.2 220 47.3
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 3.1e-37 159.5 241 44.4
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 4.1e-37 159.1 127 59.8
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 5.3e-37 158.7 242 41.7
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 9.1e-37 157.9 212 43.9
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 1.2e-36 157.5 127 58.3
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 2.6e-36 156.4 210 42.9
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 1.7e-35 153.7 195 46.7
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 1.4e-34 150.6 149 49.7
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.9e-34 150.2 182 47.3
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 1.9e-34 150.2 210 43.3
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 2.5e-34 149.8 233 41.6
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 2.1e-33 146.7 283 35.7
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 2.7e-33 146.4 125 56.8
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 6.1e-33 145.2 136 55.1
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 6.1e-33 145.2 211 41.7
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.0e-32 144.4 220 38.6
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 6.7e-32 141.7 210 40.5
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 9.7e-31 137.9 109 60.6
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 1.1e-29 134.4 211 39.3
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 1.8e-29 133.7 190 42.1
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 7.0e-29 131.7 211 38.9
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 1.6e-28 130.6 216 38.4
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 1.2e-25 120.9 151 47.0
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 9.1e-21 104.8 128 46.1
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 6.5e-19 98.6 214 35.0
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 1.1e-18 97.8 152 38.2
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 7.2e-18 95.1 80 56.2
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.6e-17 94.0 139 38.8
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.1e-17 93.6 55 74.5
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 2.0e-15 87.0 84 57.1
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 9.8e-15 84.7 71 57.7
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 3.1e-13 79.7 54 66.7
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 5.4e-13 79.0 70 52.9
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 7.0e-13 78.6 131 38.9
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 9.1e-13 78.2 89 44.9
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 2.7e-12 76.6 89 44.9
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 8.5e-11 71.6 108 38.0
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 5.5e-10 68.9 46 63.0
Carub.0006s2688 Capsella rubella HOM05D005920 ORTHO05D007211 1.3e-06 57.8 114 28.9
Sp6g09620 Schrenkiella parvula HOM05D005920 ORTHO05D007211 1.3e-06 57.8 113 30.1
Cfa025863 Carpinus fangiana HOM05D002462 ORTHO05D002893 1.7e-06 57.4 144 28.5
CBR_g52628 Chara braunii HOM05D006959 ORTHO05D008808 1.7e-06 57.4 102 33.3
AT4G08320 Arabidopsis thaliana HOM05D005920 ORTHO05D007211 3.7e-06 56.2 114 29.8
HPP92_011946 Vanilla planifolia HOM05D005920 ORTHO05D007211 4.9e-06 55.8 101 29.7
AL6G42090 Arabidopsis lyrata HOM05D005920 ORTHO05D007211 8.3e-06 55.1 112 29.5


User provided reference genes

Program Settings