Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 1.3e-96 356.3 166 100.0
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 1.3e-88 329.7 166 91.0
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 1.1e-87 326.6 166 90.4
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 2.7e-86 322.0 166 89.2
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 2.7e-86 322.0 166 89.2
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 7.8e-86 320.5 166 88.6
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 6.6e-85 317.4 169 88.8
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 6.6e-85 317.4 169 88.8
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 1.1e-84 316.6 169 88.8
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 1.1e-84 316.6 169 88.8
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 9.5e-84 313.5 169 88.2
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 3.6e-83 311.6 169 86.4
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.0e-82 310.1 169 87.0
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.8e-82 309.3 169 86.4
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 5.4e-79 297.7 169 82.8
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 5.4e-79 297.7 169 83.4
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.2e-78 296.6 169 83.4
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 3.5e-78 295.0 169 82.8
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 3.7e-72 275.0 169 77.5
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 4.9e-72 274.6 169 76.9
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.6e-70 269.6 169 76.3
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.3e-69 266.5 169 76.3
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.7e-69 266.2 169 74.6
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 1.1e-68 263.5 169 74.0
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 5.6e-68 261.2 169 72.8
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 5.6e-68 261.2 169 72.8
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 7.3e-68 260.8 169 74.6
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 2.1e-67 259.2 169 73.4
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 2.1e-67 259.2 169 74.0
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 2.1e-67 259.2 169 74.0
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 2.8e-67 258.8 169 74.0
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 3.6e-67 258.5 169 72.8
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 2.3e-66 255.8 174 71.8
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 5.6e-60 234.6 171 63.2
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 3.6e-59 231.9 169 62.7
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.6e-59 231.9 169 62.7
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.6e-59 231.9 169 62.7
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 8.1e-59 230.7 169 62.1
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 1.1e-58 230.3 169 62.1
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 5.2e-58 228.0 169 62.1
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 61.3
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 61.3
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 4.4e-57 224.9 169 59.8
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 4.4e-57 224.9 169 63.3
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 5.8e-57 224.6 169 61.5
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 7.6e-57 224.2 169 61.5
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 1.7e-56 223.0 169 60.9
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 2.2e-56 222.6 169 60.9
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 6.4e-56 221.1 169 60.4
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 8.4e-56 220.7 169 60.9
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 8.4e-56 220.7 169 58.6
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 1.1e-55 220.3 170 61.8
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 2.4e-55 219.2 168 58.9
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 2.4e-55 219.2 169 59.2
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 4.2e-55 218.4 169 60.4
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 7.1e-55 217.6 169 60.9
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.2e-54 216.9 169 61.5
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 1.2e-54 216.9 164 60.4
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 2.7e-54 215.7 169 61.5
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 4.6e-54 214.9 169 59.8
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 6.0e-54 214.5 169 60.9
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 7.8e-54 214.2 169 60.4
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.7e-53 213.0 169 58.6
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 8.7e-53 210.7 171 60.8
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 8.7e-53 210.7 171 60.2
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 1.1e-52 210.3 173 57.2
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.5e-52 209.9 169 58.6
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.5e-52 209.9 169 58.6
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.5e-52 209.9 169 58.0
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 3.3e-52 208.8 169 59.8
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 4.3e-52 208.4 171 56.1
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.3e-51 206.8 171 55.6
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 1.3e-51 206.8 169 56.2
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 2.1e-51 206.1 169 57.4
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 2.8e-51 205.7 169 56.2
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 1.4e-50 203.4 169 55.0
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 5.3e-50 201.4 171 55.0
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 9.0e-50 200.7 169 56.2
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 9.0e-50 200.7 171 57.9
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.5e-49 199.9 154 61.7
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 2.0e-49 199.5 169 58.0
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 7.6e-49 197.6 206 49.5
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 2.2e-48 196.1 166 52.4
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 3.8e-48 195.3 169 57.4
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 3.8e-48 195.3 180 52.2
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 1.1e-47 193.7 169 56.2
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.9e-47 193.0 169 55.6
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 2.4e-47 192.6 169 53.8
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 4.2e-47 191.8 170 57.1
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 4.2e-47 191.8 170 57.1
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 7.1e-47 191.0 169 54.4
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 7.1e-47 191.0 169 55.6
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 9.3e-47 190.7 157 51.6
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.2e-46 190.3 202 46.0
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 2.1e-46 189.5 164 51.2
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 6.0e-46 188.0 173 52.6
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 3.9e-45 185.3 169 52.1
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 8.7e-45 184.1 157 52.2
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 8.7e-45 184.1 185 51.9
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 8.7e-45 184.1 170 53.5
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 1.5e-44 183.3 169 50.3
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 2.5e-44 182.6 169 51.5
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 3.3e-44 182.2 142 61.3
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 3.6e-43 178.7 169 49.7
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 4.8e-43 178.3 159 48.4
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 8.1e-43 177.6 169 50.3
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 1.1e-42 177.2 153 51.6
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.8e-42 176.4 138 55.8
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 1.5e-41 173.3 183 46.4
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.5e-41 173.3 206 45.1
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 2.6e-41 172.6 169 52.1
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 2.6e-41 172.6 238 40.8
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.7e-40 169.9 126 58.7
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 6.0e-38 161.4 194 45.4
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 1.0e-37 160.6 141 56.0
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 1.0e-37 160.6 168 48.8
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 2.1e-35 152.9 170 48.2
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 4.8e-35 151.8 146 47.9
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 6.2e-35 151.4 169 47.9
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 6.2e-35 151.4 191 41.9
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 4.5e-33 145.2 174 42.5
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 1.0e-32 144.1 170 44.1
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 1.3e-32 143.7 152 50.0
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.7e-32 143.3 187 44.4
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 3.8e-32 142.1 103 61.2
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.6e-30 136.7 170 42.4
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 1.6e-30 136.7 174 42.5
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 2.1e-30 136.3 109 54.1
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 2.1e-30 136.3 127 53.5
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 1.9e-28 129.8 169 42.0
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 5.0e-24 115.2 88 59.1
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 2.3e-21 106.3 171 36.3
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 5.1e-21 105.1 107 47.7
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 3.3e-20 102.4 97 53.6
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 9.7e-20 100.9 170 35.3
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 8.2e-19 97.8 185 31.9
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 4.1e-18 95.5 164 33.5
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 5.3e-18 95.1 162 35.8
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 9.0e-18 94.4 98 41.8
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 2.6e-17 92.8 143 37.1
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.1e-15 87.4 52 71.2
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.0e-13 80.9 172 29.7
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 3.0e-13 79.3 170 28.2
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 3.7e-11 72.4 85 49.4
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 3.1e-10 69.3 67 46.3


User provided reference genes

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