Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 1.1e-245 852.8 418 100.0
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 1.2e-231 806.2 418 94.5
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 1.7e-230 802.4 418 93.5
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 1.7e-230 802.4 418 93.5
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 1.7e-230 802.4 418 93.5
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 8.4e-230 800.0 415 94.5
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 2.8e-209 731.9 432 82.9
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 3.1e-208 728.4 432 82.6
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 3.1e-208 728.4 432 82.6
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 3.1e-208 728.4 432 82.6
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 6.9e-208 727.2 432 82.4
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 4.5e-207 724.5 432 83.1
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 2.3e-203 712.2 435 80.5
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 3.3e-202 708.4 442 78.7
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 3.3e-202 708.4 440 79.5
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 4.2e-197 691.4 427 79.2
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 8.2e-193 677.2 432 76.2
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 6.7e-187 657.5 435 73.8
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 9.5e-157 557.4 429 64.8
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 1.4e-152 543.5 434 62.4
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 5.4e-152 541.6 442 61.1
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 2.0e-151 539.7 430 61.6
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 3.5e-151 538.9 437 61.8
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 1.7e-150 536.6 430 60.0
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 3.0e-150 535.8 424 61.6
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 8.6e-150 534.3 420 64.5
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 2.5e-149 532.7 437 60.6
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 9.5e-149 530.8 428 61.4
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 2.8e-148 529.3 437 61.1
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 1.4e-147 526.9 430 61.9
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 2.6e-146 522.7 378 65.3
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 4.4e-146 521.9 436 59.6
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 9.8e-146 520.8 424 60.1
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 2.2e-145 519.6 424 60.1
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 2.9e-145 519.2 437 60.4
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 2.9e-145 519.2 409 63.1
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 2.9e-145 519.2 351 68.4
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 3.7e-145 518.8 421 60.1
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 6.4e-145 518.1 419 59.9
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 6.4e-145 518.1 428 59.8
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 1.4e-144 516.9 428 61.9
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 1.4e-144 516.9 419 60.1
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 3.2e-144 515.8 342 69.3
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 3.2e-144 515.8 355 67.9
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 7.1e-144 514.6 421 60.6
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 2.7e-143 512.7 424 59.4
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 4.6e-143 511.9 422 59.2
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 7.8e-143 511.1 422 59.5
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 1.3e-142 510.4 460 59.3
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.7e-142 510.0 398 62.1
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 1.7e-142 510.0 411 60.8
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 3.9e-142 508.8 421 59.6
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 8.6e-142 507.7 408 61.3
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 1.1e-141 507.3 429 59.0
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 1.1e-141 507.3 417 59.7
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 1.9e-141 506.5 436 58.3
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 3.3e-141 505.8 438 58.4
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 5.6e-141 505.0 428 58.9
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 7.3e-141 504.6 403 61.3
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 7.3e-141 504.6 418 60.0
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 9.5e-141 504.2 416 59.4
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 9.5e-141 504.2 414 60.6
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 1.6e-140 503.4 419 59.4
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 3.6e-140 502.3 416 59.6
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 4.7e-140 501.9 450 56.9
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 6.2e-140 501.5 420 60.0
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 8.1e-140 501.1 244 96.7
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 8.1e-140 501.1 421 59.6
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 8.1e-140 501.1 426 58.5
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 8.1e-140 501.1 424 59.7
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 3.1e-139 499.2 421 60.6
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 5.2e-139 498.4 409 59.4
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 6.8e-139 498.0 409 59.2
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.2e-138 497.3 431 56.6
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 1.2e-138 497.3 415 60.0
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 2.6e-138 496.1 414 58.7
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 4.4e-138 495.4 448 56.2
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 4.4e-138 495.4 421 58.0
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 4.4e-138 495.4 423 59.8
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 5.8e-138 495.0 414 59.2
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 5.8e-138 495.0 412 59.5
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 5.8e-138 495.0 350 65.1
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 7.6e-138 494.6 435 56.8
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 9.9e-138 494.2 350 64.9
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 1.3e-137 493.8 405 61.5
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 1.7e-137 493.4 423 57.7
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 3.8e-137 492.3 424 58.5
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 4.9e-137 491.9 416 59.6
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 1.1e-136 490.7 412 60.0
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 2.4e-136 489.6 415 59.0
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 2.4e-136 489.6 414 57.5
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 3.2e-136 489.2 411 58.6
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 7.1e-136 488.0 415 59.0
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 9.2e-136 487.6 410 58.5
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 1.6e-135 486.9 410 58.5
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 3.5e-135 485.7 410 58.5
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 4.6e-135 485.3 414 58.7
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 1.7e-134 483.4 440 57.0
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 2.3e-134 483.0 416 59.9
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 3.0e-134 482.6 428 55.6
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 3.9e-134 482.3 386 61.7
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 3.9e-134 482.3 419 58.5
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 5.1e-134 481.9 414 58.5
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 1.9e-133 479.9 347 64.0
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 3.3e-133 479.2 407 58.5
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 7.3e-133 478.0 413 58.4
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 9.6e-133 477.6 415 57.8
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 4.7e-132 475.3 410 57.6
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 6.2e-132 474.9 416 58.7
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 8.1e-132 474.6 415 58.1
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.8e-131 473.4 410 57.8
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 3.4e-130 469.2 413 56.9
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 3.4e-130 469.2 333 66.1
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 5.8e-130 468.4 422 55.7
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 5.8e-130 468.4 410 56.8
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 1.7e-129 466.8 350 60.9
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 2.9e-129 466.1 416 56.5
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 3.9e-126 455.7 409 56.5
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 7.3e-125 451.4 425 55.3
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 2.8e-124 449.5 409 56.2
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 3.6e-124 449.1 348 60.1
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 1.4e-123 447.2 430 54.0
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 3.1e-123 446.0 423 54.1
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 6.9e-123 444.9 416 53.1
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 6.9e-123 444.9 318 67.3
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 1.2e-122 444.1 420 54.0
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 7.6e-122 441.4 439 53.3
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 3.2e-120 436.0 424 54.2
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.2e-119 434.1 430 50.7
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 3.5e-119 432.6 415 55.2
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 4.6e-119 432.2 414 54.1
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 1.0e-118 431.0 419 53.9
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 1.8e-118 430.3 398 55.3
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 8.7e-118 427.9 411 55.2
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 2.8e-116 422.9 416 53.4
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 8.1e-116 421.4 423 52.0
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 4.0e-115 419.1 292 66.1
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 5.8e-114 415.2 342 57.3
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 3.2e-112 409.5 342 56.7
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 2.0e-106 390.2 377 52.0
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 7.1e-104 381.7 276 63.8
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 4.6e-103 379.0 340 53.2
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 7.9e-103 378.3 340 53.5
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 6.7e-102 375.2 340 52.9
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 1.3e-100 370.9 409 47.2
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 3.4e-98 362.8 427 45.2
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 6.5e-97 358.6 305 55.7
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 1.9e-96 357.1 250 64.0
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 2.5e-96 356.7 428 47.2
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 2.1e-95 353.6 240 65.8
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 5.1e-94 349.0 409 45.2
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 8.5e-89 331.6 382 45.8
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 3.2e-88 329.7 352 46.3
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 1.8e-86 323.9 341 47.2
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 5.1e-86 322.4 338 46.7
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 2.8e-84 316.6 237 61.6
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 6.9e-83 312.0 351 47.0
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 5.9e-82 308.9 401 43.1
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 1.3e-81 307.8 296 58.8
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 5.2e-78 295.8 298 49.7
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 2.6e-77 293.5 237 56.5
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 4.1e-75 286.2 351 42.5
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.6e-74 284.3 346 41.6
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 9.4e-72 275.0 241 53.1
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 8.0e-71 271.9 360 39.4
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.8e-70 270.8 347 41.2
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 5.2e-70 269.2 339 41.0
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 6.3e-68 262.3 351 40.2
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.2e-61 241.5 346 36.4
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 1.1e-59 235.0 370 37.8
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 5.6e-40 169.5 152 57.9
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 3.7e-36 156.8 416 27.6
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 2.4e-35 154.1 154 51.9
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 6.4e-20 102.8 122 43.4
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 8.4e-20 102.4 85 50.6
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.1e-19 102.1 114 42.1
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 2.3e-17 94.4 79 49.4
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 9.6e-16 89.0 130 43.8
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.0e-13 81.3 100 39.0
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 6.4e-12 76.3 87 46.0
Prupe.6G163800 Prunus persica HOM05D003764 ORTHO05D335910 2.4e-06 57.8 53 58.5
ATR0555G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 4.0e-06 57.0 67 31.3
Nn1g01454 Nelumbo nucifera HOM05D003764 ORTHO05D004356 4.0e-06 57.0 36 66.7


User provided reference genes

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