Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 1.6e-37 158.7 68 100.0
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 3.3e-35 151.0 68 95.6
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 5.7e-35 150.2 65 98.5
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 9.7e-35 149.4 66 97.0
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 3.7e-34 147.5 67 97.0
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 3.7e-34 147.5 67 97.0
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 3.7e-34 147.5 67 97.0
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 3.7e-34 147.5 67 97.0
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 3.7e-34 147.5 67 97.0
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 4.8e-34 147.1 67 94.0
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 4.8e-34 147.1 67 94.0
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 8.2e-34 146.4 68 95.6
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 8.2e-34 146.4 65 95.4
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 8.2e-34 146.4 65 95.4
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 1.1e-33 146.0 69 92.8
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 5.9e-32 140.2 68 91.2
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 5.9e-32 140.2 68 91.2
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 5.9e-32 140.2 68 91.2
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 1.0e-31 139.4 59 98.3
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 1.3e-31 139.0 69 92.8
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 1.4e-30 135.6 69 85.5
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 1.9e-30 135.2 58 98.3
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 4.7e-29 130.6 71 81.7
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 1.4e-28 129.0 63 85.7
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.8e-28 128.6 71 80.3
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 2.3e-28 128.3 69 76.8
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 3.9e-28 127.5 67 79.1
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 3.9e-28 127.5 67 79.1
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 3.9e-28 127.5 69 75.4
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 5.2e-28 127.1 70 78.6
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 6.7e-28 126.7 67 77.6
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 2.6e-27 124.8 69 76.8
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 2.6e-27 124.8 69 76.8
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 2.6e-27 124.8 69 76.8
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 2.6e-27 124.8 69 76.8
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 2.6e-27 124.8 67 76.1
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 3.3e-27 124.4 66 74.2
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 5.7e-27 123.6 66 77.3
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 9.7e-27 122.9 74 73.0
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 1.7e-26 122.1 65 75.4
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 2.2e-26 121.7 67 74.6
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 2.8e-26 121.3 66 72.7
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 2.8e-26 121.3 62 79.0
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 3.7e-26 120.9 71 76.1
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 4.8e-26 120.6 65 76.9
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 4.8e-26 120.6 62 79.0
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 6.3e-26 120.2 61 82.0
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 6.3e-26 120.2 62 80.6
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 1.1e-25 119.4 71 74.6
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 1.1e-25 119.4 71 73.2
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 1.1e-25 119.4 71 74.6
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 1.4e-25 119.0 65 76.9
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 1.4e-25 119.0 71 69.0
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 1.8e-25 118.6 71 74.6
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 1.8e-25 118.6 61 77.0
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 1.8e-25 118.6 65 76.9
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 3.1e-25 117.9 69 72.5
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 4.1e-25 117.5 68 73.5
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 4.1e-25 117.5 71 73.2
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 4.1e-25 117.5 71 73.2
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 4.1e-25 117.5 71 73.2
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 7.0e-25 116.7 67 70.1
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 7.0e-25 116.7 67 74.6
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 7.0e-25 116.7 67 73.1
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 7.0e-25 116.7 71 73.2
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 7.0e-25 116.7 71 74.6
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 1.2e-24 115.9 71 73.2
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 1.2e-24 115.9 65 76.9
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.6e-24 115.5 60 73.3
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 2.0e-24 115.2 67 73.1
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 2.0e-24 115.2 65 76.9
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 2.6e-24 114.8 67 70.1
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 2.6e-24 114.8 65 69.2
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 2.6e-24 114.8 65 69.2
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 3.5e-24 114.4 60 75.0
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 3.5e-24 114.4 66 69.7
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 4.5e-24 114.0 80 63.8
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 4.5e-24 114.0 63 68.3
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 5.9e-24 113.6 65 73.8
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 5.9e-24 113.6 80 63.8
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 7.7e-24 113.2 70 68.6
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 1.0e-23 112.8 65 70.8
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 1.3e-23 112.5 67 70.1
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 1.3e-23 112.5 65 70.8
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.7e-23 112.1 67 67.2
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 1.7e-23 112.1 71 69.0
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 5.0e-23 110.5 60 71.7
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 6.5e-23 110.2 54 74.1
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 1.5e-22 109.0 70 67.1
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 2.5e-22 108.2 56 75.0
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 1.2e-21 105.9 60 73.3
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 3.6e-21 104.4 69 66.7
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 3.6e-21 104.4 63 71.4
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 4.7e-21 104.0 57 70.2
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 4.7e-21 104.0 46 97.8
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 1.8e-20 102.1 69 60.9
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 2.3e-20 101.7 60 70.0
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 5.2e-20 100.5 61 70.5
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 5.2e-20 100.5 70 58.6
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.3e-18 95.9 50 84.0
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 2.2e-18 95.1 60 70.0
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 4.8e-18 94.0 51 76.5
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 4.8e-18 94.0 51 76.5
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 4.8e-18 94.0 50 80.0
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 8.3e-18 93.2 56 64.3
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 2.4e-17 91.7 50 76.0
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 2.4e-17 91.7 59 59.3
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 2.9e-15 84.7 48 68.8
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 6.5e-15 83.6 48 72.9
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 8.5e-15 83.2 48 70.8
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 8.5e-15 83.2 48 66.7
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 5.5e-14 80.5 50 66.0
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 5.2e-12 73.9 52 69.2
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 2.2e-10 68.6 52 63.5
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 1.4e-09 65.9 49 59.2
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 1.6e-08 62.4 33 69.7
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 7.7e-08 60.1 38 71.1
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 2.3e-07 58.5 33 72.7
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 3.8e-07 57.8 32 71.9
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 5.0e-07 57.4 33 66.7
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 5.0e-07 57.4 32 71.9
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 6.6e-07 57.0 33 66.7
MCO07G568 Micromonas commoda HOM05D006241 ORTHO05D007842 6.6e-07 57.0 61 41.0
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.1e-06 56.2 33 63.6
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.1e-06 56.2 33 63.6
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 1.5e-06 55.8 36 63.9
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 2.5e-06 55.1 36 61.1


User provided reference genes

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