Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 9.3e-116 420.2 214 100.0
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 3.5e-107 391.7 215 94.0
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 3.5e-107 391.7 215 94.0
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 2.6e-102 375.6 210 92.4
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 3.4e-102 375.2 210 92.4
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 3.4e-102 375.2 210 92.4
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 3.4e-102 375.2 232 85.8
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 1.9e-100 369.4 217 87.1
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 1.9e-100 369.4 217 87.1
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 3.2e-100 368.6 219 86.3
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 1.3e-98 363.2 221 84.6
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 5.7e-97 357.8 233 81.1
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 9.6e-97 357.1 226 81.0
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 9.6e-97 357.1 228 81.1
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 1.3e-96 356.7 223 83.4
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 4.8e-96 354.8 218 83.9
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 1.3e-93 346.7 227 78.9
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 2.3e-74 282.7 204 70.6
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 1.1e-73 280.4 201 71.6
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 1.3e-72 276.9 199 68.3
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 1.3e-72 276.9 193 68.9
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 1.7e-72 276.6 184 73.9
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 2.8e-72 275.8 176 74.4
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 3.7e-72 275.4 185 73.0
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 1.8e-71 273.1 185 68.6
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 4.1e-71 271.9 186 73.1
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 4.1e-71 271.9 202 66.3
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 5.3e-71 271.6 199 68.8
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 7.0e-71 271.2 194 67.0
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 9.1e-71 270.8 189 68.3
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 9.1e-71 270.8 177 72.9
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 1.6e-70 270.0 185 70.8
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 1.6e-70 270.0 200 65.0
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 2.0e-70 269.6 189 68.3
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 2.6e-70 269.2 178 71.9
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 2.6e-70 269.2 186 71.0
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 3.5e-70 268.9 202 66.8
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 3.5e-70 268.9 177 72.9
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 3.5e-70 268.9 208 64.4
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 7.7e-70 267.7 196 68.9
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 7.7e-70 267.7 189 67.7
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 1.0e-69 267.3 197 67.0
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 1.3e-69 266.9 179 68.7
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 1.7e-69 266.5 211 63.5
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.7e-69 266.5 206 66.5
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 2.9e-69 265.8 200 67.0
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 3.8e-69 265.4 197 65.5
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 8.5e-69 264.2 198 66.7
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 1.5e-68 263.5 206 65.5
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 1.5e-68 263.5 243 58.8
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.9e-68 263.1 206 66.0
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 1.9e-68 263.1 266 54.9
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 2.5e-68 262.7 227 61.2
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 2.5e-68 262.7 173 74.0
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 3.2e-68 262.3 173 72.8
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 4.2e-68 261.9 174 70.1
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 5.5e-68 261.5 183 69.4
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 7.2e-68 261.2 172 72.7
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 7.2e-68 261.2 198 67.7
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 9.4e-68 260.8 188 69.7
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 1.6e-67 260.0 183 68.9
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 2.1e-67 259.6 175 70.3
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 6.1e-67 258.1 201 62.7
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 8.0e-67 257.7 193 66.8
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 2.3e-66 256.1 182 67.6
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 3.0e-66 255.8 185 69.2
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 4.0e-66 255.4 169 70.4
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 2.0e-65 253.1 194 61.9
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 4.4e-65 251.9 215 60.0
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 1.3e-64 250.4 223 58.7
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 2.2e-64 249.6 193 64.8
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 2.2e-64 249.6 180 66.1
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 1.8e-63 246.5 174 64.4
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 4.1e-63 245.4 212 58.5
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 7.0e-63 244.6 176 64.8
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 1.6e-62 243.4 205 58.0
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 5.0e-61 238.4 175 68.0
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 5.0e-61 238.4 226 55.8
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 6.5e-61 238.0 176 61.4
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 2.5e-60 236.1 180 62.8
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 1.6e-59 233.4 171 63.7
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 2.1e-59 233.0 175 66.9
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 6.1e-59 231.5 202 58.9
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 8.8e-58 227.6 168 68.5
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 9.8e-57 224.2 186 63.4
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 3.7e-56 222.2 174 66.1
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 4.1e-55 218.8 178 61.8
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 7.0e-55 218.0 216 56.0
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 1.7e-53 213.4 153 68.0
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 3.8e-53 212.2 163 67.5
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 7.2e-52 208.0 156 66.7
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 9.4e-52 207.6 225 55.1
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 2.7e-51 206.1 134 67.9
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 5.2e-50 201.8 178 57.9
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 3.4e-49 199.1 200 56.0
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 5.7e-49 198.4 191 57.6
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 2.4e-47 193.0 171 55.6
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 7.0e-47 191.4 155 65.2
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 2.9e-45 186.0 192 53.1
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 8.6e-45 184.5 145 62.8
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 4.3e-44 182.2 163 50.9
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 2.1e-43 179.9 126 73.8
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 2.8e-43 179.5 163 49.7
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 6.1e-43 178.3 124 71.8
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 6.8e-42 174.9 181 47.0
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 1.8e-39 166.8 161 54.7
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 5.0e-37 158.7 185 49.2
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 8.0e-35 151.4 151 53.0
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 6.4e-32 141.7 122 57.4
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 1.1e-31 141.0 102 65.7
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 6.0e-30 135.2 111 58.6
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 1.3e-29 134.0 71 94.4
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 3.0e-29 132.9 94 62.8
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 7.3e-28 128.3 85 75.3
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 2.8e-27 126.3 134 50.7
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 3.1e-26 122.9 126 51.6
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 2.2e-24 116.7 87 65.5
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 4.9e-24 115.5 99 67.7
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 3.9e-21 105.9 59 78.0
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 2.5e-20 103.2 127 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 9.5e-20 101.3 144 41.7
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 1.8e-18 97.1 69 78.3
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 3.8e-16 89.4 69 72.5
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 7.8e-14 81.6 58 74.1
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 1.1e-12 77.8 53 73.6
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 5.6e-12 75.5 51 68.6
MCO13G478 Micromonas commoda HOM05D006215 ORTHO05D007719 2.6e-09 66.6 111 33.3
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 4.9e-08 62.4 45 62.2
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 4.2e-07 59.3 35 85.7


User provided reference genes

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