Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07012 Brassica carinata HOM05D007344 ORTHO05D009010 3.6e-123 444.9 219 100.0
BcaB03g14973 Brassica carinata HOM05D007344 ORTHO05D009010 7.5e-113 410.6 219 90.0
BolC6t39693H Brassica oleracea HOM05D007344 ORTHO05D009010 3.4e-105 385.2 219 84.9
BcaB03g14972 Brassica carinata HOM05D007344 ORTHO05D009010 3.7e-104 381.7 223 83.4
BcaB03g14974 Brassica carinata HOM05D007344 ORTHO05D009010 3.7e-104 381.7 223 83.4
A07p38410 Brassica napus HOM05D007344 ORTHO05D009010 8.3e-104 380.6 218 85.8
BraA07t31402Z Brassica rapa HOM05D007344 ORTHO05D009010 8.3e-104 380.6 218 85.8
C06p46460 Brassica napus HOM05D007344 ORTHO05D009010 3.2e-103 378.6 219 83.6
BolC6t39697H Brassica oleracea HOM05D007344 ORTHO05D009010 3.2e-103 378.6 217 84.3
BcaC08g46676 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-101 373.2 217 82.9
C06p46520 Brassica napus HOM05D007344 ORTHO05D009010 1.3e-101 373.2 217 82.9
BolC6t39698H Brassica oleracea HOM05D007344 ORTHO05D009010 4.7e-91 338.2 224 78.1
BolC6t39696H Brassica oleracea HOM05D007344 ORTHO05D009010 1.7e-85 319.7 195 77.4
Sp5g27360 Schrenkiella parvula HOM05D007344 ORTHO05D009010 5.6e-84 314.7 222 72.1
Carub.0002s1910 Capsella rubella HOM05D007344 ORTHO05D009010 4.3e-76 288.5 223 69.5
BcaB03g14970 Brassica carinata HOM05D007344 ORTHO05D009010 7.4e-76 287.7 203 73.4
Thhalv10019095m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 1.9e-71 273.1 223 66.8
BcaC08g46673 Brassica carinata HOM05D007344 ORTHO05D009010 1.6e-70 270.0 221 68.3
C06p46430 Brassica napus HOM05D007344 ORTHO05D009010 1.6e-70 270.0 221 68.3
BraA07t31400Z Brassica rapa HOM05D007344 ORTHO05D009010 1.6e-70 270.0 222 68.5
Carub.0002s1914 Capsella rubella HOM05D007344 ORTHO05D009010 2.1e-70 269.6 220 66.8
BcaC08g46677 Brassica carinata HOM05D007344 ORTHO05D009010 1.9e-68 263.1 213 67.1
AL2G31960 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 7.4e-68 261.2 221 64.3
AT1G72290 Arabidopsis thaliana HOM05D007344 ORTHO05D009010 4.9e-64 248.4 211 62.1
BcaB05g24739 Brassica carinata HOM05D007344 ORTHO05D009010 1.8e-61 240.0 222 56.3
BcaB03g14976 Brassica carinata HOM05D007344 ORTHO05D009010 1.1e-60 237.3 222 59.0
BcaC03g15361 Brassica carinata HOM05D007344 ORTHO05D009010 1.5e-60 236.9 219 56.6
A02p17860 Brassica napus HOM05D007344 ORTHO05D009010 7.4e-60 234.6 221 57.0
BraA02t06836Z Brassica rapa HOM05D007344 ORTHO05D009010 7.4e-60 234.6 221 57.0
CARHR065170 Cardamine hirsuta HOM05D007344 ORTHO05D009010 3.7e-59 232.3 218 59.2
BcaC03g15366 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-57 227.3 221 55.7
C02p29750 Brassica napus HOM05D007344 ORTHO05D009010 1.2e-57 227.3 221 55.7
BcaB05g24743 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-56 223.8 225 56.4
Carub.0002s1909 Capsella rubella HOM05D007344 ORTHO05D009010 2.2e-56 223.0 224 58.0
BcaB05g24740 Brassica carinata HOM05D007344 ORTHO05D009010 2.9e-56 222.6 225 56.4
BolC2t09022H Brassica oleracea HOM05D007344 ORTHO05D009010 9.3e-55 217.6 215 54.9
A02p17920 Brassica napus HOM05D007344 ORTHO05D009010 6.1e-54 214.9 224 54.0
BraA02t06839Z Brassica rapa HOM05D007344 ORTHO05D009010 6.1e-54 214.9 224 54.0
A02p17890 Brassica napus HOM05D007344 ORTHO05D009010 1.0e-53 214.2 215 52.6
BraA02t06838Z Brassica rapa HOM05D007344 ORTHO05D009010 1.0e-53 214.2 215 52.6
BcaC03g15365 Brassica carinata HOM05D007344 ORTHO05D009010 2.3e-53 213.0 215 54.4
C02p29730 Brassica napus HOM05D007344 ORTHO05D009010 2.3e-53 213.0 215 54.4
BolC2t09025H Brassica oleracea HOM05D007344 ORTHO05D009010 6.7e-53 211.5 224 54.5
BcaB05g24737 Brassica carinata HOM05D007344 ORTHO05D009010 1.1e-52 210.7 220 53.2
C02p29770 Brassica napus HOM05D007344 ORTHO05D009010 4.3e-52 208.8 224 54.0
BcaB05g24736 Brassica carinata HOM05D007344 ORTHO05D009010 1.6e-51 206.8 220 53.2
Carub.0002s1912 Capsella rubella HOM05D007344 ORTHO05D009010 5.3e-50 201.8 227 54.2
CARHR065180 Cardamine hirsuta HOM05D007344 ORTHO05D009010 3.4e-49 199.1 219 53.9
BolC2t09020H Brassica oleracea HOM05D007344 ORTHO05D009010 2.7e-46 189.5 189 54.5
CARHR065160 Cardamine hirsuta HOM05D007344 ORTHO05D009010 3.0e-45 186.0 213 48.8
BcaC08g46679 Brassica carinata HOM05D007344 ORTHO05D009010 1.1e-44 184.1 220 51.4
C06p46550 Brassica napus HOM05D007344 ORTHO05D009010 1.1e-44 184.1 220 51.4
BolC6t39700H Brassica oleracea HOM05D007344 ORTHO05D009010 1.1e-44 184.1 220 51.4
BolC6t39707H Brassica oleracea HOM05D007344 ORTHO05D009010 1.3e-43 180.6 211 52.6
A07p38440 Brassica napus HOM05D007344 ORTHO05D009010 2.8e-43 179.5 219 50.7
BolC6t39691H Brassica oleracea HOM05D007344 ORTHO05D009010 3.7e-43 179.1 220 51.4
BraA07t31405Z Brassica rapa HOM05D007344 ORTHO05D009010 6.3e-43 178.3 218 50.5
C06p46590 Brassica napus HOM05D007344 ORTHO05D009010 4.1e-42 175.6 224 49.6
BolC6t39705H Brassica oleracea HOM05D007344 ORTHO05D009010 4.1e-42 175.6 224 49.6
BolC6t39694H Brassica oleracea HOM05D007344 ORTHO05D009010 1.7e-40 170.2 228 50.0
BcaC08g46682 Brassica carinata HOM05D007344 ORTHO05D009010 1.9e-39 166.8 172 54.1
BcaB03g14975 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-38 164.1 219 47.5
BcaC08g46678 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-38 164.1 215 47.0
C06p46540 Brassica napus HOM05D007344 ORTHO05D009010 1.2e-38 164.1 215 47.0
BolC6t39699H Brassica oleracea HOM05D007344 ORTHO05D009010 1.2e-38 164.1 215 47.0
A07p38420 Brassica napus HOM05D007344 ORTHO05D009010 2.3e-37 159.8 215 46.5
BraA07t31403Z Brassica rapa HOM05D007344 ORTHO05D009010 2.3e-37 159.8 215 46.5
AL2G31970 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 3.0e-37 159.5 163 52.8
C06p46470 Brassica napus HOM05D007344 ORTHO05D009010 1.3e-35 154.1 217 49.8
BcaC08g46675 Brassica carinata HOM05D007344 ORTHO05D009010 6.3e-35 151.8 89 85.4
C06p46510 Brassica napus HOM05D007344 ORTHO05D009010 6.3e-35 151.8 89 85.4
BcaC08g46684 Brassica carinata HOM05D007344 ORTHO05D032659 1.2e-33 147.5 204 49.0
C06p46640 Brassica napus HOM05D007344 ORTHO05D032659 1.2e-33 147.5 204 49.0
BolC6t39709H Brassica oleracea HOM05D007344 ORTHO05D032659 1.2e-33 147.5 204 49.0
A07p38390 Brassica napus HOM05D007344 ORTHO05D009010 1.7e-32 143.7 217 45.6
C06p46530 Brassica napus HOM05D007344 ORTHO05D009010 3.8e-32 142.5 103 70.9
A09p37590 Brassica napus HOM05D007344 ORTHO05D009010 2.7e-30 136.3 228 42.5
BraA09t39269Z Brassica rapa HOM05D007344 ORTHO05D009010 2.7e-30 136.3 228 42.5
BcaC05g26866 Brassica carinata HOM05D007344 ORTHO05D009010 2.3e-29 133.3 228 41.7
BolC5t31464H Brassica oleracea HOM05D007344 ORTHO05D009010 3.0e-29 132.9 228 41.2
BcaB07g32467 Brassica carinata HOM05D007344 ORTHO05D009010 4.4e-28 129.0 228 41.2
C05p27460 Brassica napus HOM05D007344 ORTHO05D009010 4.4e-28 129.0 238 39.9
THA.LOC104813298 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 1.3e-27 127.5 223 41.3
Aa31LG6G10960 Aethionema arabicum HOM05D007344 ORTHO05D009010 8.2e-27 124.8 225 39.1
C02p29790 Brassica napus HOM05D007344 ORTHO05D009010 7.7e-25 118.2 128 55.5
BcaC03g15367 Brassica carinata HOM05D007344 ORTHO05D009010 1.7e-24 117.1 128 55.5
CARHR027960 Cardamine hirsuta HOM05D007344 ORTHO05D009010 2.9e-24 116.3 228 38.6
A07p11180 Brassica napus HOM05D007344 ORTHO05D009010 2.5e-23 113.2 222 38.3
BraA07t28908Z Brassica rapa HOM05D007344 ORTHO05D009010 2.5e-23 113.2 222 38.3
BcaC06g35373 Brassica carinata HOM05D007344 ORTHO05D009010 5.5e-23 112.1 221 37.1
C07p16850 Brassica napus HOM05D007344 ORTHO05D009010 5.5e-23 112.1 221 37.1
BcaC08g46680 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-22 110.9 78 70.5
BolC7t42191H Brassica oleracea HOM05D007344 ORTHO05D009010 1.2e-22 110.9 221 37.1
BcaC08g46681 Brassica carinata HOM05D007344 ORTHO05D032082 2.3e-21 106.7 141 45.4
C06p46560 Brassica napus HOM05D007344 ORTHO05D041415 2.3e-21 106.7 64 81.2
C06p46580 Brassica napus HOM05D007344 ORTHO05D032082 2.3e-21 106.7 141 45.4
BolC6t39701H Brassica oleracea HOM05D007344 ORTHO05D041415 2.3e-21 106.7 64 81.2
BolC6t39703H Brassica oleracea HOM05D007344 ORTHO05D032082 2.3e-21 106.7 141 45.4
THA.LOC104814041 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 8.8e-21 104.8 224 37.5
Thhalv10009709m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 3.4e-20 102.8 159 42.1
THA.LOC104812280 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 5.7e-20 102.1 126 46.8
THA.LOC104813935 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.3e-19 100.9 225 36.4
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 8.3e-19 98.2 225 36.0
Aa31sc276G90 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.4e-18 97.4 206 36.4
Aa31LG6G10970 Aethionema arabicum HOM05D007344 ORTHO05D009010 2.0e-17 93.6 204 38.2
C06p46620 Brassica napus HOM05D007344 ORTHO05D009010 1.7e-16 90.5 158 39.9
AL2G33090 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 2.1e-14 83.6 225 32.0
BcaB03g15050 Brassica carinata HOM05D000535 ORTHO05D000427 3.6e-14 82.8 228 32.0
BcaC08g46756 Brassica carinata HOM05D000535 ORTHO05D009010 8.0e-14 81.6 162 36.4
C06p47530 Brassica napus HOM05D000535 ORTHO05D009010 1.8e-13 80.5 205 32.2
Sp5g28260 Schrenkiella parvula HOM05D000535 ORTHO05D009010 1.8e-13 80.5 234 31.2
BolC6t39791H Brassica oleracea HOM05D000535 ORTHO05D009010 5.2e-13 79.0 162 35.8
AT1G73325 Arabidopsis thaliana HOM05D000535 ORTHO05D000427 4.4e-12 75.9 165 34.5
THA.LOC104812190 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.7e-11 73.9 165 30.9
THA.LOC104812189 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 2.8e-11 73.2 192 30.2
Sabra04G0045700 Salix brachista HOM05D000535 ORTHO05D000427 7.0e-10 68.6 172 34.3
Nitab4.5_0000477g0210 Nicotiana tabacum HOM05D000535 ORTHO05D000427 4.5e-09 65.9 131 33.6
Thecc.05G198000 Theobroma cacao HOM05D000535 ORTHO05D000427 7.8e-09 65.1 154 30.5
HanXRQChr06g0165011 Helianthus annuus HOM05D000535 ORTHO05D000427 1.0e-08 64.7 162 34.0
Potri.004G067900 Populus trichocarpa HOM05D000535 ORTHO05D000427 1.3e-08 64.3 213 29.1
Lalb_Chr01g0008701 Lupinus albus HOM05D000535 ORTHO05D000427 2.3e-08 63.5 159 36.5
Nitab4.5_0000477g0200 Nicotiana tabacum HOM05D000535 ORTHO05D000427 2.3e-08 63.5 131 32.8
Nitab4.5_0002771g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 2.3e-08 63.5 131 32.8
Lj2g0028248 Lotus japonicus HOM05D000535 ORTHO05D000427 2.9e-08 63.2 217 30.4
Medtr6g059760 Medicago truncatula HOM05D000535 ORTHO05D000427 2.9e-08 63.2 217 33.6
Duzib128G0529 Durio zibethinus HOM05D000535 ORTHO05D000427 5.0e-08 62.4 156 30.8
Nitab4.5_0000339g0150 Nicotiana tabacum HOM05D000535 ORTHO05D000427 5.0e-08 62.4 131 33.6
CAN.G861.39 Capsicum annuum HOM05D000535 ORTHO05D000427 6.6e-08 62.0 137 31.4
ClCG01G014760 Citrullus lanatus HOM05D000535 ORTHO05D000427 8.6e-08 61.6 153 30.1
Dinv10714 Davidia involucrata HOM05D000535 ORTHO05D000427 1.1e-07 61.2 139 29.5
SalBow5G3210 Salvia bowleyana HOM05D000535 ORTHO05D000427 1.9e-07 60.5 148 33.1
Medtr3g106585 Medicago truncatula HOM05D000535 ORTHO05D013302 3.3e-07 59.7 168 31.0
Gohir.D04G025100 Gossypium hirsutum HOM05D000535 ORTHO05D000427 4.3e-07 59.3 156 28.8
Oeu018758.1 Olea europaea HOM05D000535 ORTHO05D000427 4.3e-07 59.3 153 33.3
Sp1g24730 Schrenkiella parvula HOM05D007344 ORTHO05D009010 4.3e-07 59.3 221 27.1
CSS0016167 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 5.6e-07 58.9 162 27.8
Gohir.A05G392000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 5.6e-07 58.9 156 28.8
Gorai.012G027700 Gossypium raimondii HOM05D000535 ORTHO05D000427 5.6e-07 58.9 156 28.8
Medtr3g106620 Medicago truncatula HOM05D000535 ORTHO05D013302 7.3e-07 58.5 136 30.9
Oeu032705.1 Olea europaea HOM05D000535 ORTHO05D000427 7.3e-07 58.5 154 33.1
AUR62028780 Chenopodium quinoa HOM05D000535 ORTHO05D012047 1.2e-06 57.8 166 28.3
Cc04_g08350 Coffea canephora HOM05D000535 ORTHO05D000427 1.2e-06 57.8 144 30.6
Gohir.A10G215032 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.6e-06 57.4 169 31.4
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 1.6e-06 57.4 162 31.5
vmacro18605 Vaccinium macrocarpon HOM05D000535 ORTHO05D000427 2.1e-06 57.0 133 30.8
ClCG02G016000 Citrullus lanatus HOM05D000535 ORTHO05D000427 2.8e-06 56.6 131 33.6
Hma1.2p1_0816F.1_g222920 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 2.8e-06 56.6 134 33.6
Solyc06g072220.1 Solanum lycopersicum HOM05D000535 ORTHO05D000427 2.8e-06 56.6 122 34.4
Sopen06g028540 Solanum pennellii HOM05D000535 ORTHO05D000427 2.8e-06 56.6 136 33.8
Ah.02g129700 Amaranthus hybridus HOM05D000535 ORTHO05D000427 3.6e-06 56.2 153 33.3
Haze_18412 Corylus avellana HOM05D000535 ORTHO05D000427 3.6e-06 56.2 133 30.1
DCAR_011412 Daucus carota HOM05D000535 ORTHO05D000427 3.6e-06 56.2 160 26.9
Cfa017803 Carpinus fangiana HOM05D000535 ORTHO05D000427 4.7e-06 55.8 133 30.8
AUR62005776 Chenopodium quinoa HOM05D000535 ORTHO05D012047 4.7e-06 55.8 172 28.5
AUR62005780 Chenopodium quinoa HOM05D000535 ORTHO05D000427 4.7e-06 55.8 160 27.5
ECA233G0242 Erigeron canadensis HOM05D000535 ORTHO05D015640 4.7e-06 55.8 164 28.0
arahy.Tifrunner.gnm1.ann1.9N9F55 Arachis hypogaea HOM05D000535 ORTHO05D000427 6.1e-06 55.5 140 32.9
arahy.Tifrunner.gnm1.ann1.SJW6UC Arachis hypogaea HOM05D000535 ORTHO05D000427 6.1e-06 55.5 143 32.9
Cc04_g08380 Coffea canephora HOM05D000535 ORTHO05D000427 6.1e-06 55.5 144 30.6
Lj5g0017298 Lotus japonicus HOM05D000535 ORTHO05D000427 6.1e-06 55.5 137 32.8
Glyma.08G341000 Glycine max HOM05D000535 ORTHO05D011300 8.0e-06 55.1 164 27.4
Psat0s2953g0120 Pisum sativum HOM05D000535 ORTHO05D000427 8.0e-06 55.1 159 32.7


User provided reference genes

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