Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 0.0e+00 1142.9 596 100.0
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 1.0e-276 956.4 600 85.8
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 3.3e-272 941.4 600 84.7
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 1.3e-271 939.5 600 84.5
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 2.5e-267 925.2 619 81.3
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 4.2e-267 924.5 619 81.1
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 2.6e-261 905.2 636 76.7
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.5e-259 899.4 643 76.4
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 2.7e-250 868.6 640 73.9
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 7.5e-248 860.5 629 75.2
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.3e-244 849.7 632 74.5
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 2.8e-239 832.0 633 72.4
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 2.5e-211 739.2 630 65.4
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 7.3e-211 737.6 627 66.2
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 2.4e-209 732.6 630 64.8
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 5.8e-208 728.0 630 64.3
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 6.4e-207 724.5 588 67.3
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 7.8e-205 717.6 637 63.1
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 4.3e-203 711.8 677 61.6
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 2.8e-202 709.1 629 62.8
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 1.4e-201 706.8 629 62.5
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 3.4e-200 702.2 617 64.5
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 1.6e-197 693.3 625 61.4
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 8.1e-194 681.0 558 66.5
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 2.4e-193 679.5 640 61.7
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 3.4e-192 675.6 667 58.9
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 3.0e-180 636.0 657 55.7
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 1.3e-178 630.6 629 57.4
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.2e-176 624.0 641 56.0
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 7.6e-176 621.3 660 55.0
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 2.9e-175 619.4 660 54.8
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 3.5e-173 612.5 594 58.8
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 7.9e-173 611.3 630 54.4
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 3.0e-172 609.4 594 58.6
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 3.9e-172 609.0 594 58.4
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 1.6e-170 603.6 689 52.2
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.2e-170 603.2 601 57.1
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 1.4e-169 600.5 658 53.8
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 3.1e-169 599.4 661 53.1
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 9.0e-169 597.8 609 56.0
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 1.5e-168 597.0 640 53.8
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 2.6e-168 596.3 663 54.0
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.6e-168 596.3 601 56.6
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 7.7e-168 594.7 607 56.3
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.3e-167 594.0 636 55.2
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.9e-167 592.8 636 55.2
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 3.8e-167 592.4 645 53.3
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 3.8e-167 592.4 661 52.6
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 6.5e-167 591.7 674 52.4
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 1.9e-166 590.1 651 53.3
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 5.5e-166 588.6 608 56.4
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 1.6e-165 587.0 661 53.4
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 2.1e-165 586.6 620 55.2
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 2.1e-165 586.6 665 52.0
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 2.1e-165 586.6 666 52.4
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 3.6e-165 585.9 662 52.9
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 4.6e-165 585.5 619 53.0
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.0e-164 584.3 636 54.1
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 3.0e-164 582.8 541 60.3
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 2.0e-163 580.1 681 50.4
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 3.3e-163 579.3 554 57.6
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 1.7e-162 577.0 598 55.2
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 2.8e-162 576.2 536 59.7
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 2.8e-162 576.2 554 57.2
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 3.7e-162 575.9 673 51.4
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 3.7e-162 575.9 664 50.9
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 8.2e-162 574.7 663 51.4
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 4.1e-161 572.4 655 51.5
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 9.1e-161 571.2 609 54.0
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 2.0e-160 570.1 605 54.9
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 7.7e-160 568.2 668 50.6
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.0e-159 567.8 668 51.0
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.0e-159 567.8 668 51.0
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 2.2e-159 566.6 576 54.5
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 8.5e-159 564.7 654 50.8
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 1.1e-158 564.3 595 53.6
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 2.5e-158 563.1 650 50.3
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 1.2e-157 560.8 632 51.7
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 1.2e-157 560.8 647 50.2
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 3.0e-156 556.2 600 53.5
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 3.0e-156 556.2 641 50.4
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 2.0e-155 553.5 654 50.6
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 5.7e-155 552.0 647 49.9
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 1.7e-154 550.4 646 50.0
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 7.0e-153 545.0 598 52.2
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 5.9e-152 542.0 667 48.9
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 3.8e-151 539.3 596 52.0
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 2.7e-149 533.1 677 48.3
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.6e-149 532.7 676 48.4
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 8.0e-149 531.6 650 50.0
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 2.6e-147 526.6 650 49.8
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 1.7e-146 523.9 652 49.7
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 4.5e-144 515.8 560 51.1
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 4.5e-144 515.8 582 49.8
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 7.7e-144 515.0 508 57.5
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 1.3e-143 514.2 662 48.5
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 1.1e-142 511.1 560 50.9
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 4.2e-142 509.2 613 48.3
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 4.7e-141 505.8 594 49.7
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 4.7e-141 505.8 597 48.6
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 1.0e-140 504.6 610 48.5
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 4.0e-140 502.7 535 51.8
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 6.8e-140 501.9 673 46.7
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 7.5e-139 498.4 667 46.9
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 4.8e-138 495.7 605 48.3
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 9.1e-137 491.5 534 52.4
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 2.0e-136 490.3 613 48.9
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 2.2e-135 486.9 610 46.9
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 6.5e-135 485.3 528 49.4
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 7.2e-134 481.9 607 46.6
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 5.4e-129 465.7 597 44.7
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 2.0e-128 463.8 678 43.4
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 7.2e-126 455.3 512 48.8
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 9.5e-126 454.9 629 42.8
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 2.1e-125 453.8 555 48.3
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 6.1e-125 452.2 446 57.4
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 4.3e-118 429.5 614 44.1
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 2.2e-114 417.2 554 46.2
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 3.9e-111 406.4 357 61.3
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.5e-110 404.4 602 43.7
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 4.0e-108 396.4 218 91.3
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 2.1e-104 384.0 619 39.6
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 5.1e-103 379.4 319 65.2
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 3.6e-101 373.2 638 38.6
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 8.9e-92 342.0 244 71.3
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.7e-82 311.2 553 37.8
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 1.5e-78 298.1 610 37.7
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 9.0e-76 288.9 449 37.9
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.2e-75 288.5 620 34.5
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 2.0e-75 287.7 422 40.0
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 4.6e-72 276.6 321 48.9
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 7.4e-70 269.2 610 32.6
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 1.3e-61 241.9 131 92.4
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.2e-32 145.6 240 39.2
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 1.4e-15 89.0 535 21.9
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 3.0e-15 87.8 64 75.0
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 2.0e-06 58.5 50 60.0
A07p40740 Brassica napus HOM05D005308 ORTHO05D006494 3.4e-06 57.8 42 76.2


User provided reference genes

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