Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 0.0e+00 1107.0 583 100.0
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 0.0e+00 1105.1 583 99.8
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 0.0e+00 1085.1 583 96.6
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 8.5e-289 996.5 611 88.9
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 1.9e-288 995.3 611 88.7
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 1.3e-273 946.0 600 84.7
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 4.0e-270 934.5 627 78.0
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 2.8e-263 911.8 620 78.7
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 6.2e-263 910.6 634 76.2
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 4.6e-258 894.4 621 77.0
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 3.9e-257 891.3 632 75.2
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 4.0e-254 881.3 622 75.7
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 5.7e-216 754.6 668 63.2
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.1e-214 750.4 623 66.0
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 1.1e-214 750.4 622 65.9
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 6.9e-214 747.7 580 68.6
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 1.3e-212 743.4 622 65.6
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 2.9e-212 742.3 620 65.6
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 9.3e-211 737.3 627 63.3
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 2.2e-204 716.1 623 62.4
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 1.1e-203 713.8 623 62.1
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 2.1e-202 709.5 657 60.7
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 7.9e-202 707.6 618 63.8
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 7.4e-200 701.0 623 61.8
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 9.1e-198 694.1 550 67.6
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 5.9e-197 691.4 632 62.5
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 2.0e-184 649.8 626 57.5
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 4.4e-184 648.7 656 55.9
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 3.7e-183 645.6 648 55.9
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 1.8e-182 643.3 654 55.2
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 5.3e-182 641.7 642 55.8
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 8.5e-180 634.4 597 56.4
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 2.5e-179 632.9 658 54.4
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.5e-179 632.9 597 57.5
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 7.2e-179 631.3 627 56.9
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 9.4e-179 630.9 585 58.6
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 1.6e-178 630.2 585 58.3
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.7e-178 629.4 627 56.8
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 4.7e-178 628.6 585 58.5
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 3.0e-177 625.9 597 57.0
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.2e-176 624.0 602 56.5
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.2e-176 624.0 628 55.6
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 3.4e-176 622.5 640 54.5
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 9.8e-176 620.9 630 54.6
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 1.3e-175 620.5 676 52.7
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 1.7e-175 620.2 655 54.7
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 1.7e-175 620.2 594 56.4
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 4.8e-175 618.6 599 57.3
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 1.4e-174 617.1 656 53.8
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 1.8e-174 616.7 652 53.7
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 1.8e-174 616.7 593 56.8
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 5.4e-174 615.1 656 52.3
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.6e-173 613.6 541 61.7
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 1.6e-173 613.6 599 55.1
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 7.7e-173 611.3 599 56.8
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 1.3e-172 610.5 668 51.9
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 1.7e-172 610.1 666 53.3
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 3.8e-172 609.0 634 53.5
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 2.5e-171 606.3 598 55.7
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 2.5e-171 606.3 666 53.3
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 3.6e-170 602.4 666 52.0
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 4.7e-170 602.1 660 53.2
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 6.8e-169 598.2 641 53.4
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 6.8e-169 598.2 660 51.1
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.5e-168 597.0 661 51.6
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 2.0e-168 596.7 551 57.9
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 2.6e-168 596.3 599 54.8
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 3.4e-168 595.9 606 53.0
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 4.9e-167 592.0 574 56.4
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 6.3e-167 591.7 551 57.0
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 3.1e-166 589.3 653 51.8
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 3.1e-166 589.3 653 51.8
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 3.1e-166 589.3 559 55.6
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 5.4e-166 588.6 651 51.2
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 2.0e-165 586.6 651 50.8
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.0e-165 586.6 625 52.0
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 7.7e-165 584.7 641 51.5
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.5e-163 580.5 598 54.5
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 1.6e-162 577.0 601 53.6
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 6.1e-162 575.1 597 53.6
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 1.8e-161 573.5 643 50.9
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 2.0e-160 570.1 632 50.5
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 3.4e-160 569.3 598 51.3
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 4.4e-160 568.9 600 52.7
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 9.8e-160 567.8 588 53.4
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.8e-158 563.5 600 53.3
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 9.2e-158 561.2 600 53.0
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 2.0e-157 560.1 643 50.9
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 7.3e-155 551.6 638 49.7
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 2.1e-154 550.1 583 53.5
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 3.6e-154 549.3 657 51.4
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 6.2e-154 548.5 643 50.5
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 1.3e-151 540.8 601 52.2
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 4.1e-150 535.8 544 52.8
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 1.6e-149 533.9 571 50.6
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 4.6e-149 532.3 618 48.2
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 1.7e-148 530.4 670 46.7
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 2.3e-145 520.0 528 52.5
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 6.8e-145 518.5 496 57.1
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 2.0e-144 516.9 590 49.5
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 2.6e-144 516.5 548 50.2
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 9.8e-144 514.6 530 53.0
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 1.3e-143 514.2 536 51.7
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 2.2e-143 513.5 614 47.9
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 8.3e-143 511.5 596 48.7
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 8.3e-143 511.5 524 53.4
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 4.1e-142 509.2 599 48.2
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 6.6e-140 501.9 605 49.1
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 2.1e-138 496.9 588 47.6
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 5.2e-137 492.3 554 48.7
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 8.4e-135 485.0 598 45.5
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.3e-131 473.0 618 46.3
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 4.7e-130 469.2 544 48.5
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 2.4e-129 466.8 481 51.4
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 8.9e-129 464.9 615 43.6
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 3.5e-125 453.0 602 45.3
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 5.1e-124 449.1 449 56.1
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 3.6e-122 443.0 548 46.9
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 3.2e-118 429.9 217 99.5
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 4.5e-112 409.5 362 62.4
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 7.6e-112 408.7 592 44.6
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 2.8e-106 390.2 607 39.2
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 1.3e-103 381.3 312 64.4
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 9.3e-102 375.2 488 42.0
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 2.6e-96 357.1 240 73.3
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 3.6e-85 320.1 594 38.6
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 6.7e-84 315.8 582 35.7
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 1.8e-81 307.8 489 37.0
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.3e-79 301.6 606 34.0
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 1.1e-78 298.5 415 40.0
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 2.5e-78 297.4 465 37.2
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 6.3e-74 282.7 301 51.5
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 6.1e-61 239.6 130 92.3
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.9e-38 164.9 244 39.3
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 1.8e-20 105.1 538 21.9
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 2.6e-19 101.3 63 81.0
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 8.7e-07 59.7 194 28.4
A07p40740 Brassica napus HOM05D005308 ORTHO05D006494 1.9e-06 58.5 40 80.0
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 7.3e-06 56.6 49 55.1


User provided reference genes

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