Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06947 Brassica carinata HOM05D005426 ORTHO05D006996 1.4e-63 246.1 125 100.0
BcaB04g17089 Brassica carinata HOM05D131151 ORTHO05D093167 5.7e-41 171.0 144 67.4
A07p32800 Brassica napus HOM05D005426 ORTHO05D006996 2.7e-14 82.4 111 52.3
BraA07t30907Z Brassica rapa HOM05D005426 ORTHO05D006996 2.7e-14 82.4 111 52.3
C06p39010 Brassica napus HOM05D005426 ORTHO05D006996 3.5e-14 82.0 111 52.3
BolC6t38993H Brassica oleracea HOM05D005426 ORTHO05D006996 3.5e-14 82.0 111 52.3
BcaNung05534 Brassica carinata HOM05D005426 ORTHO05D006996 1.7e-13 79.7 110 53.6
Carub.0002s1099 Capsella rubella HOM05D005426 ORTHO05D006996 8.6e-13 77.4 104 51.0
CARHR056990 Cardamine hirsuta HOM05D005426 ORTHO05D006996 8.6e-13 77.4 110 50.9
Aa31LG2G2420 Aethionema arabicum HOM05D005426 ORTHO05D006996 2.5e-12 75.9 110 50.0
AL2G21140 Arabidopsis lyrata HOM05D005426 ORTHO05D006996 4.3e-12 75.1 110 49.1
AT1G65320 Arabidopsis thaliana HOM05D005426 ORTHO05D006996 4.3e-12 75.1 110 49.1
BcaB05g22892 Brassica carinata HOM05D005426 ORTHO05D095396 4.3e-12 75.1 216 32.9
Sp5g19990 Schrenkiella parvula HOM05D005426 ORTHO05D006996 5.6e-12 74.7 106 51.9
THA.LOC104821953 Tarenaya hassleriana HOM05D005426 ORTHO05D006996 1.2e-11 73.6 112 46.4
THA.LOC104823814 Tarenaya hassleriana HOM05D005426 ORTHO05D006996 1.2e-11 73.6 110 47.3
Thhalv10018605m.g Eutrema salsugineum HOM05D005426 ORTHO05D006996 1.6e-11 73.2 110 49.1
THA.LOC104805695 Tarenaya hassleriana HOM05D005426 ORTHO05D006996 2.1e-11 72.8 105 47.6
CiPaw.07G079000 Carya illinoinensis HOM05D005426 ORTHO05D006996 3.1e-10 68.9 111 47.7
Sed0018334 Sechium edule HOM05D005426 ORTHO05D006996 4.0e-10 68.6 126 42.9
Cpa.g.sc123.2 Carica papaya HOM05D005426 ORTHO05D006996 5.2e-10 68.2 105 46.7
Haze_04540 Corylus avellana HOM05D005426 ORTHO05D006996 6.8e-10 67.8 105 45.7
Atru.chr12.1803 Acer truncatum HOM05D005426 ORTHO05D006996 8.9e-10 67.4 105 46.7
Atru.chr12.1804 Acer truncatum HOM05D005426 ORTHO05D006996 8.9e-10 67.4 105 46.7
Cfa006272 Carpinus fangiana HOM05D005426 ORTHO05D006996 1.2e-09 67.0 105 45.7
Potri.019G052650 Populus trichocarpa HOM05D005426 ORTHO05D006996 2.6e-09 65.9 105 46.7
Sabra19G0062300 Salix brachista HOM05D005426 ORTHO05D006996 2.6e-09 65.9 105 46.7
Manes.09G184500 Manihot esculenta HOM05D005426 ORTHO05D006996 3.4e-09 65.5 128 41.4
BcaB07g32511 Brassica carinata HOM05D005426 ORTHO05D006996 4.4e-09 65.1 96 47.9
Nn1g09751 Nelumbo nucifera HOM05D005426 ORTHO05D006996 4.4e-09 65.1 105 45.7
Nn3g20159 Nelumbo nucifera HOM05D005426 ORTHO05D006996 4.4e-09 65.1 105 45.7
Hund07333 Selenicereus undatus HOM05D005426 ORTHO05D006996 4.4e-09 65.1 105 41.9
HanXRQChr05g0156971 Helianthus annuus HOM05D005426 ORTHO05D006996 5.8e-09 64.7 105 42.9
CSS0022114 Camellia sinensis var. sinensis HOM05D005426 ORTHO05D006996 9.9e-09 63.9 105 41.9
SHI13731 Sapria himalayana HOM05D005426 ORTHO05D006996 1.3e-08 63.5 108 42.6
Ah.06g195530 Amaranthus hybridus HOM05D005426 ORTHO05D006996 2.2e-08 62.8 105 43.8
AUR62000325 Chenopodium quinoa HOM05D005426 ORTHO05D006996 2.2e-08 62.8 108 43.5
Cc09_g03460 Coffea canephora HOM05D005426 ORTHO05D006996 3.7e-08 62.0 105 41.9
COL.COLO4_27402 Corchorus olitorius HOM05D005426 ORTHO05D006996 3.7e-08 62.0 105 45.7
Potri.013G087100 Populus trichocarpa HOM05D005426 ORTHO05D006996 3.7e-08 62.0 142 38.7
TPR.G28454 Trifolium pratense HOM05D005426 ORTHO05D006996 3.7e-08 62.0 107 44.9
CANSAT54G2247 Cannabis sativa HOM05D005426 ORTHO05D006996 4.9e-08 61.6 126 38.9
AUR62006669 Chenopodium quinoa HOM05D005426 ORTHO05D006996 4.9e-08 61.6 108 42.6
ClCG11G010880 Citrullus lanatus HOM05D005426 ORTHO05D006996 4.9e-08 61.6 126 40.5
Lj1g0020299 Lotus japonicus HOM05D005426 ORTHO05D006996 4.9e-08 61.6 105 42.9
Phvul.008G055300 Phaseolus vulgaris HOM05D005426 ORTHO05D006996 4.9e-08 61.6 105 45.7
GSVIVG01019128001 Vitis vinifera HOM05D005426 ORTHO05D006996 4.9e-08 61.6 105 44.8
Sc09g0001540 Simmondsia chinensis HOM05D005426 ORTHO05D006996 6.4e-08 61.2 105 42.9
Aqoxy2G04057 Aquilegia oxysepala HOM05D005426 ORTHO05D006996 8.3e-08 60.8 105 39.0
Lj1C584T3 Lonicera japonica HOM05D005426 ORTHO05D006996 1.1e-07 60.5 107 41.1
Manes.08G104500 Manihot esculenta HOM05D005426 ORTHO05D006996 1.1e-07 60.5 107 45.8
TAR362G1314 Trochodendron aralioides HOM05D005426 ORTHO05D006996 1.1e-07 60.5 126 38.9
CsaV3_2G009590 Cucumis sativus L. HOM05D005426 ORTHO05D006996 1.4e-07 60.1 126 41.3
FvH4_6g00690 Fragaria vesca HOM05D005426 ORTHO05D006996 1.4e-07 60.1 129 39.5
Psat3g103920 Pisum sativum HOM05D005426 ORTHO05D006996 1.4e-07 60.1 105 44.8
MBI07_g22285_MAGBIO Magnolia biondii HOM05D005426 ORTHO05D006996 1.9e-07 59.7 105 43.8
MD04G1243500 Malus domestica HOM05D005426 ORTHO05D006996 1.9e-07 59.7 124 37.9
VMungo1383G1630 Vigna mungo HOM05D005426 ORTHO05D006996 1.9e-07 59.7 105 43.8
Ca_07968_v3 Cicer arietinum L. HOM05D005426 ORTHO05D006996 2.4e-07 59.3 105 43.8
ECA233G3371 Erigeron canadensis HOM05D005426 ORTHO05D006996 2.4e-07 59.3 122 41.8
Oeu057509.1 Olea europaea HOM05D005426 ORTHO05D006996 2.4e-07 59.3 105 41.9
RcHm_v2.0_Chr3g0448131 Rosa chinensis HOM05D005426 ORTHO05D006996 2.4e-07 59.3 129 38.8
TWI36G0998 Tripterygium wilfordii HOM05D005426 ORTHO05D006996 2.4e-07 59.3 105 42.9
Actinidia03832 Actinidia chinensis HOM05D005426 ORTHO05D006996 3.2e-07 58.9 105 41.0
Dinv02954 Davidia involucrata HOM05D005426 ORTHO05D006996 3.2e-07 58.9 105 42.9
Duzib128G0943 Durio zibethinus HOM05D005426 ORTHO05D006996 3.2e-07 58.9 105 45.7
Sed0025831 Sechium edule HOM05D005426 ORTHO05D006996 3.2e-07 58.9 119 41.2
Migut.F01881 Erythranthe guttata HOM05D005426 ORTHO05D006996 4.1e-07 58.5 99 43.4
FAN02G2606 Fragaria x ananassa HOM05D005426 ORTHO05D006996 4.1e-07 58.5 129 38.8
Sabra13G0076900 Salix brachista HOM05D005426 ORTHO05D006996 4.1e-07 58.5 142 37.3
Actinidia06809 Actinidia chinensis HOM05D005426 ORTHO05D006996 5.4e-07 58.2 105 41.9
DCAR_023850 Daucus carota HOM05D005426 ORTHO05D006996 5.4e-07 58.2 105 40.0
Prupe.6G359700 Prunus persica HOM05D005426 ORTHO05D006996 5.4e-07 58.2 121 38.0
MSTRG.322 Avicennia marina HOM05D005426 ORTHO05D006996 7.1e-07 57.8 121 37.2
Lsat_1_v5_gn_8_2121 Lactuca sativa HOM05D005426 ORTHO05D006996 7.1e-07 57.8 105 37.1
Rhsim05G0168400 Rhododendron simsii HOM05D005426 ORTHO05D006996 7.1e-07 57.8 105 41.0
Hund21893 Selenicereus undatus HOM05D005426 ORTHO05D006996 7.1e-07 57.8 106 42.5
Hund27503 Selenicereus undatus HOM05D005426 ORTHO05D006996 7.1e-07 57.8 106 42.5
CDE05G2572 Ceratophyllum demersum HOM05D005426 ORTHO05D006996 9.2e-07 57.4 129 36.4
SGA_v2.0_scaffold122G33173 Striga asiatica HOM05D005426 ORTHO05D006996 9.2e-07 57.4 97 42.3
Thecc.05G201400 Theobroma cacao HOM05D005426 ORTHO05D006996 9.2e-07 57.4 105 43.8
EL10Ac4g09981 Beta vulgaris HOM05D005426 ORTHO05D006996 1.2e-06 57.0 105 41.9
Nitab4.5_0000946g0070 Nicotiana tabacum HOM05D005426 ORTHO05D006996 1.2e-06 57.0 107 41.1
Sopen04g025550 Solanum pennellii HOM05D005426 ORTHO05D006996 1.2e-06 57.0 105 40.0
PGSC0003DMG400010533 Solanum tuberosum HOM05D005426 ORTHO05D006996 1.2e-06 57.0 108 43.5
CAN.G217.1 Capsicum annuum HOM05D005426 ORTHO05D006996 1.6e-06 56.6 107 40.2
MELO3C008749.2 Cucumis melo HOM05D005426 ORTHO05D006996 1.6e-06 56.6 129 38.8
Dinv29116 Davidia involucrata HOM05D005426 ORTHO05D006996 1.6e-06 56.6 142 35.9
FAN09G3203 Fragaria x ananassa HOM05D005426 ORTHO05D006996 1.6e-06 56.6 122 37.7
FAN14G1411 Fragaria x ananassa HOM05D005426 ORTHO05D006996 1.6e-06 56.6 122 37.7
Glyma.09G251700 Glycine max HOM05D005426 ORTHO05D006996 1.6e-06 56.6 105 42.9
PGR119G1058 Punica granatum HOM05D005426 ORTHO05D006996 1.6e-06 56.6 107 42.1
arahy.Tifrunner.gnm1.ann1.UZF72T Arachis hypogaea HOM05D005426 ORTHO05D006996 2.1e-06 56.2 105 42.9
arahy.Tifrunner.gnm1.ann1.V3Q9UL Arachis hypogaea HOM05D005426 ORTHO05D006996 2.1e-06 56.2 105 42.9
CDE05G2651 Ceratophyllum demersum HOM05D005426 ORTHO05D006996 2.1e-06 56.2 127 36.2
Gohir.D13G159300 Gossypium hirsutum HOM05D005426 ORTHO05D006996 2.1e-06 56.2 107 43.0
Gorai.013G180000 Gossypium raimondii HOM05D005426 ORTHO05D006996 2.1e-06 56.2 107 43.0
TAR633G1216 Trochodendron aralioides HOM05D005426 ORTHO05D006996 2.1e-06 56.2 105 43.8
Eucgr.B01402 Eucalyptus grandis HOM05D005426 ORTHO05D006996 2.7e-06 55.8 105 41.0
Solyc04g056630.3 Solanum lycopersicum HOM05D005426 ORTHO05D006996 2.7e-06 55.8 105 39.0
FAN05G3082 Fragaria x ananassa HOM05D005426 ORTHO05D006996 3.5e-06 55.5 129 38.0
Glyma.18G240900 Glycine max HOM05D005426 ORTHO05D006996 4.6e-06 55.1 106 41.5
Lalb_Chr01g0020331 Lupinus albus HOM05D005426 ORTHO05D006996 4.6e-06 55.1 105 41.0
Medtr7g079680 Medicago truncatula HOM05D005426 ORTHO05D006996 4.6e-06 55.1 105 41.9
Nitab4.5_0001857g0010 Nicotiana tabacum HOM05D005426 ORTHO05D006996 4.6e-06 55.1 107 40.2
Oeu062056.1 Olea europaea HOM05D005426 ORTHO05D006996 4.6e-06 55.1 105 40.0
MSTRG.8218 Avicennia marina HOM05D005426 ORTHO05D006996 6.0e-06 54.7 104 39.4
PSO357G0677 Papaver somniferum HOM05D005426 ORTHO05D006996 6.0e-06 54.7 129 34.9
HPP92_003199 Vanilla planifolia HOM05D005426 ORTHO05D006996 6.0e-06 54.7 116 38.8
vmacro19612 Vaccinium macrocarpon HOM05D005426 ORTHO05D006996 7.8e-06 54.3 110 40.9


User provided reference genes

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