Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06927 Brassica carinata HOM05D002110 ORTHO05D001148 3.3e-62 241.5 118 100.0
BcaC08g44933 Brassica carinata HOM05D002110 ORTHO05D001148 8.1e-37 157.1 93 90.3
C06p25610 Brassica napus HOM05D002110 ORTHO05D001148 8.1e-37 157.1 93 90.3
BolC6t37724H Brassica oleracea HOM05D002110 ORTHO05D001148 8.1e-37 157.1 93 90.3
BraA07t30069Z Brassica rapa HOM05D002110 ORTHO05D001148 8.1e-37 157.1 93 90.3
A07p24260 Brassica napus HOM05D002110 ORTHO05D001148 1.8e-36 156.0 93 89.2
Sp5g04200 Schrenkiella parvula HOM05D002110 ORTHO05D001148 4.1e-33 144.8 92 82.6
CARHR169040 Cardamine hirsuta HOM05D002110 ORTHO05D001148 5.4e-33 144.4 92 80.4
BcaB02g08244 Brassica carinata HOM05D002110 ORTHO05D001148 7.1e-33 144.1 92 81.5
Thhalv10005788m.g Eutrema salsugineum HOM05D002110 ORTHO05D001148 1.6e-32 142.9 92 80.4
AL5G40410 Arabidopsis lyrata HOM05D002110 ORTHO05D001148 7.8e-32 140.6 91 81.3
BcaB02g08248 Brassica carinata HOM05D002110 ORTHO05D001148 1.3e-31 139.8 92 78.3
C04p33850 Brassica napus HOM05D002110 ORTHO05D001148 1.3e-31 139.8 92 80.4
BolC4t24952H Brassica oleracea HOM05D002110 ORTHO05D001148 1.3e-31 139.8 92 80.4
AT3G58650 Arabidopsis thaliana HOM05D002110 ORTHO05D001148 8.6e-31 137.1 91 79.1
Carub.0005s2544 Capsella rubella HOM05D002110 ORTHO05D001148 3.3e-30 135.2 92 77.2
Aa31LG10G13230 Aethionema arabicum HOM05D002110 ORTHO05D001148 9.6e-30 133.7 92 76.1
THA.LOC104818745 Tarenaya hassleriana HOM05D002110 ORTHO05D001148 4.5e-19 98.2 92 56.5
CARHR186660 Cardamine hirsuta HOM05D002110 ORTHO05D001148 9.9e-19 97.1 92 59.8
AL3G16480 Arabidopsis lyrata HOM05D002110 ORTHO05D001148 2.2e-18 95.9 93 59.1
Aa31LG11G9780 Aethionema arabicum HOM05D002110 ORTHO05D001148 2.9e-18 95.5 92 56.5
CARHR080220 Cardamine hirsuta HOM05D002110 ORTHO05D001148 6.4e-18 94.4 92 55.4
AT3G05750 Arabidopsis thaliana HOM05D002110 ORTHO05D001148 5.4e-17 91.3 94 56.4
Carub.0003s0512 Capsella rubella HOM05D002110 ORTHO05D001148 2.1e-16 89.4 92 54.3
AL6G38740 Arabidopsis lyrata HOM05D002110 ORTHO05D001148 3.5e-16 88.6 92 55.4
THA.LOC104821738 Tarenaya hassleriana HOM05D002110 ORTHO05D001148 3.5e-16 88.6 91 53.8
BraA02t08867Z Brassica rapa HOM05D002110 ORTHO05D001148 6.0e-16 87.8 96 55.2
A02p38970 Brassica napus HOM05D002110 ORTHO05D001148 7.9e-16 87.4 96 55.2
BolC2t11916H Brassica oleracea HOM05D002110 ORTHO05D001148 1.0e-15 87.0 96 55.2
Thhalv10020097m.g Eutrema salsugineum HOM05D002110 ORTHO05D001148 3.9e-15 85.1 92 55.4
Sp3g04640 Schrenkiella parvula HOM05D002110 ORTHO05D001148 5.1e-15 84.7 92 55.4
Carub.0006s2453 Capsella rubella HOM05D002110 ORTHO05D001148 6.7e-15 84.3 91 50.5
Sp2g21130 Schrenkiella parvula HOM05D002110 ORTHO05D001148 6.7e-15 84.3 92 53.3
BcaC03g17825 Brassica carinata HOM05D002110 ORTHO05D001148 1.9e-14 82.8 96 54.2
C02p58560 Brassica napus HOM05D002110 ORTHO05D001148 2.8e-13 79.0 96 49.0
Thhalv10003651m.g Eutrema salsugineum HOM05D002110 ORTHO05D001148 8.1e-13 77.4 91 50.5
BcaB04g19708 Brassica carinata HOM05D002110 ORTHO05D001148 2.4e-12 75.9 92 51.1
Atru.chr2.146 Acer truncatum HOM05D002110 ORTHO05D001148 4.0e-12 75.1 88 51.1
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 4.0e-12 75.1 93 46.2
FAN02G0159 Fragaria x ananassa HOM05D002110 ORTHO05D001148 4.0e-12 75.1 88 54.5
BcaC04g23673 Brassica carinata HOM05D002110 ORTHO05D001148 9.0e-12 73.9 92 50.0
C09p06200 Brassica napus HOM05D002110 ORTHO05D001148 9.0e-12 73.9 92 50.0
BolC9t53540H Brassica oleracea HOM05D002110 ORTHO05D001148 9.0e-12 73.9 92 50.0
RcHm_v2.0_Chr3g0456841 Rosa chinensis HOM05D002110 ORTHO05D001148 9.0e-12 73.9 88 56.8
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 1.2e-11 73.6 94 45.7
FAN05G1103 Fragaria x ananassa HOM05D002110 ORTHO05D001148 1.2e-11 73.6 88 53.4
FAN09G3212 Fragaria x ananassa HOM05D002110 ORTHO05D001148 1.5e-11 73.2 88 53.4
FAN14G4042 Fragaria x ananassa HOM05D002110 ORTHO05D001148 1.5e-11 73.2 88 53.4
FvH4_6g07210 Fragaria vesca HOM05D002110 ORTHO05D001148 2.0e-11 72.8 88 53.4
Ciclev10000207m.g Citrus clementina HOM05D002110 ORTHO05D001148 2.6e-11 72.4 91 48.4
QL03p018272 Quercus lobata HOM05D002110 ORTHO05D001148 5.8e-11 71.2 88 48.9
A09p05620 Brassica napus HOM05D002110 ORTHO05D001148 7.6e-11 70.9 92 48.9
BraA09t36204Z Brassica rapa HOM05D002110 ORTHO05D001148 7.6e-11 70.9 92 48.9
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 1.7e-10 69.7 94 44.7
Cfa006684 Carpinus fangiana HOM05D002110 ORTHO05D001148 1.7e-10 69.7 88 47.7
CiPaw.07G027700 Carya illinoinensis HOM05D002110 ORTHO05D001148 1.7e-10 69.7 88 46.6
Prupe.6G315200 Prunus persica HOM05D002110 ORTHO05D001148 1.7e-10 69.7 88 53.4
MD12G1207600 Malus domestica HOM05D002110 ORTHO05D001148 2.9e-10 68.9 89 51.7
Haze_04082 Corylus avellana HOM05D002110 ORTHO05D001148 3.8e-10 68.6 89 46.1
AT5G26910 Arabidopsis thaliana HOM05D002110 ORTHO05D001148 6.4e-10 67.8 91 46.2
MD04G1195500 Malus domestica HOM05D002110 ORTHO05D001148 8.4e-10 67.4 89 51.7
Potri.013G010500 Populus trichocarpa HOM05D002110 ORTHO05D001148 1.1e-09 67.0 88 48.9
Manes.09G175400 Manihot esculenta HOM05D002110 ORTHO05D001148 7.1e-09 64.3 87 48.3
Potri.005G019700 Populus trichocarpa HOM05D002110 ORTHO05D001148 9.3e-09 63.9 87 47.1
CANSAT54G2967 Cannabis sativa HOM05D002110 ORTHO05D001148 4.6e-08 61.6 94 41.5
Cpa.g.sc48.141 Carica papaya HOM05D002110 ORTHO05D001148 4.6e-08 61.6 89 46.1
Sabra05G0026000 Salix brachista HOM05D002110 ORTHO05D002923 6.0e-08 61.2 87 47.1
FAN09G0805 Fragaria x ananassa HOM05D002110 ORTHO05D001148 1.8e-07 59.7 88 44.3
Gorai.007G305300 Gossypium raimondii HOM05D002110 ORTHO05D001148 1.8e-07 59.7 89 46.1
EL10Ac4g09833 Beta vulgaris HOM05D002110 ORTHO05D001148 2.3e-07 59.3 89 44.9
Hma1.2p1_0013F.1_g008920 Hydrangea macrophylla HOM05D002110 ORTHO05D001148 3.0e-07 58.9 90 42.2
TWI36G1140 Tripterygium wilfordii HOM05D002110 ORTHO05D001148 3.0e-07 58.9 88 43.2
Cpa.g.sc9.96 Carica papaya HOM05D002110 ORTHO05D001148 3.9e-07 58.5 81 46.9
MELO3C004200.2 Cucumis melo HOM05D002110 ORTHO05D001148 3.9e-07 58.5 64 51.6
Duzib128G1743 Durio zibethinus HOM05D002110 ORTHO05D001148 6.7e-07 57.8 88 45.5
Sabra13G0009100 Salix brachista HOM05D002110 ORTHO05D001148 6.7e-07 57.8 88 44.3
Gohir.A11G272300 Gossypium hirsutum HOM05D002110 ORTHO05D001148 8.7e-07 57.4 89 44.9
CsaV3_2G006910 Cucumis sativus L. HOM05D002110 ORTHO05D001148 1.1e-06 57.0 64 50.0
Sed0009638 Sechium edule HOM05D002110 ORTHO05D001148 1.1e-06 57.0 64 50.0
Actinidia40356 Actinidia chinensis HOM05D002110 ORTHO05D001148 1.5e-06 56.6 81 46.9
CSS0027216 Camellia sinensis var. sinensis HOM05D002110 ORTHO05D001148 1.5e-06 56.6 81 44.4
Cfa015480 Carpinus fangiana HOM05D002110 ORTHO05D001148 1.5e-06 56.6 81 44.4
ClCG02G015110 Citrullus lanatus HOM05D002110 ORTHO05D001148 1.5e-06 56.6 64 50.0
Haze_01085 Corylus avellana HOM05D002110 ORTHO05D001148 1.5e-06 56.6 81 44.4
Sc19g0003440 Simmondsia chinensis HOM05D002110 ORTHO05D001148 1.9e-06 56.2 81 44.4
HanXRQChr09g0248801 Helianthus annuus HOM05D002110 ORTHO05D001148 2.5e-06 55.8 87 40.2
Sed0021161 Sechium edule HOM05D002110 ORTHO05D001148 2.5e-06 55.8 69 44.9
AUR62000688 Chenopodium quinoa HOM05D002110 ORTHO05D001148 3.3e-06 55.5 89 42.7
Lsat_1_v5_gn_6_19261 Lactuca sativa HOM05D002110 ORTHO05D001148 3.3e-06 55.5 81 40.7
FAN12G1009 Fragaria x ananassa HOM05D002110 ORTHO05D001148 4.3e-06 55.1 82 47.6
FAN12G1080 Fragaria x ananassa HOM05D002110 ORTHO05D001148 4.3e-06 55.1 82 47.6
Gohir.D11G282500 Gossypium hirsutum HOM05D002110 ORTHO05D001148 4.3e-06 55.1 91 45.1
PSO210G7621 Papaver somniferum HOM05D002110 ORTHO05D001148 4.3e-06 55.1 81 44.4
ECA233G6262 Erigeron canadensis HOM05D002110 ORTHO05D001148 5.6e-06 54.7 81 42.0
Thecc.05G320800 Theobroma cacao HOM05D002110 ORTHO05D001148 5.6e-06 54.7 88 45.5
AUR62005270 Chenopodium quinoa HOM05D002110 ORTHO05D001148 7.4e-06 54.3 89 42.7
Duzib177G1097 Durio zibethinus HOM05D002110 ORTHO05D001148 7.4e-06 54.3 88 44.3
HanXRQChr13g0394391 Helianthus annuus HOM05D002110 ORTHO05D001148 7.4e-06 54.3 81 40.7
Manes.03G201600 Manihot esculenta HOM05D002110 ORTHO05D001148 7.4e-06 54.3 81 44.4
Ah.06g188910 Amaranthus hybridus HOM05D002110 ORTHO05D001148 9.6e-06 53.9 113 37.2
FvH4_4g19300 Fragaria vesca HOM05D002110 ORTHO05D001148 9.6e-06 53.9 82 46.3


User provided reference genes

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