Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 5.8e-300 1033.9 705 100.0
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 5.2e-232 808.1 710 78.6
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 2.0e-228 796.2 710 81.4
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 3.1e-224 782.3 711 72.3
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 3.1e-224 782.3 711 77.4
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 6.8e-224 781.2 711 77.1
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 6.9e-192 674.9 723 68.0
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 8.1e-185 651.4 882 60.4
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 1.1e-184 651.0 734 59.8
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 2.6e-183 646.4 734 71.4
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.0e-182 644.4 713 68.3
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 7.1e-181 638.3 711 65.0
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 2.7e-180 636.3 713 65.6
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 6.0e-180 635.2 711 64.8
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 7.4e-170 601.7 968 55.4
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 2.8e-145 520.0 727 60.2
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 5.2e-139 499.2 580 53.1
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.3e-137 494.6 627 62.8
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 1.1e-120 438.3 758 48.5
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.1e-117 428.3 357 67.8
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.8e-76 290.8 231 68.4
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 1.3e-41 175.6 735 27.2
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 8.5e-41 172.9 738 25.6
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.9e-40 171.8 773 26.1
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 2.7e-39 167.9 740 25.7
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 3.9e-38 164.1 773 27.6
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 6.7e-38 163.3 745 25.8
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 7.4e-37 159.8 721 25.4
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.1e-35 156.0 737 25.2
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.8e-35 155.2 713 25.0
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 2.4e-35 154.8 577 26.2
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.4e-35 154.8 766 27.7
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.1e-35 154.5 728 25.0
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 4.1e-35 154.1 218 45.9
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 4.1e-35 154.1 738 26.0
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 9.1e-35 152.9 237 39.2
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.6e-34 152.1 725 35.2
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 2.0e-34 151.8 547 27.4
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 2.0e-34 151.8 718 37.0
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.9e-34 150.2 725 35.7
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 1.0e-33 149.4 738 26.3
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 1.7e-33 148.7 722 25.8
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 2.9e-33 147.9 751 26.6
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 6.5e-33 146.7 721 35.4
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 6.5e-33 146.7 760 24.6
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 6.5e-33 146.7 218 40.8
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 1.1e-32 146.0 210 41.4
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 1.1e-32 146.0 730 24.7
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.2e-32 144.4 727 35.2
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 5.5e-32 143.7 726 35.8
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 9.4e-32 142.9 723 24.2
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 1.2e-31 142.5 758 27.7
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 1.6e-31 142.1 181 41.4
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 2.1e-31 141.7 728 25.4
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 3.6e-31 141.0 542 26.4
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 3.6e-31 141.0 228 36.4
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 1.4e-30 139.0 217 37.8
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.8e-30 138.7 744 24.2
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 2.3e-30 138.3 751 24.5
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 4.0e-30 137.5 765 25.6
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 5.2e-30 137.1 758 25.1
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.5e-29 135.6 228 36.0
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 2.0e-29 135.2 227 40.5
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 4.8e-28 130.6 632 29.1
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 6.3e-28 130.2 753 24.8
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 1.4e-27 129.0 223 37.7
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.4e-27 128.3 716 24.2
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 9.1e-27 126.3 544 26.7
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.2e-26 125.9 503 24.5
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 1.6e-26 125.6 145 47.6
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 2.0e-26 125.2 756 24.1
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 2.7e-26 124.8 817 29.1
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 1.3e-25 122.5 145 43.4
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.3e-25 122.5 145 43.4
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 1.3e-25 122.5 723 23.9
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 2.2e-25 121.7 216 41.7
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 3.8e-25 120.9 742 23.7
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 1.1e-24 119.4 606 26.6
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.9e-24 118.6 743 25.4
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 2.5e-24 118.2 225 33.8
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 4.2e-24 117.5 878 25.6
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.5e-24 117.1 144 41.7
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.6e-23 115.5 229 36.2
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 3.6e-23 114.4 237 34.2
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 3.6e-23 114.4 227 35.7
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 4.7e-23 114.0 827 27.9
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 6.1e-23 113.6 216 40.3
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 4.0e-22 110.9 214 36.4
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 8.8e-22 109.8 171 34.5
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 8.8e-22 109.8 177 37.9
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.2e-21 109.4 781 22.8
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.2e-21 109.4 714 23.0
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 1.5e-21 109.0 201 35.3
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 2.0e-21 108.6 781 22.4
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 2.0e-21 108.6 184 37.0
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 2.6e-21 108.2 197 34.0
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.7e-21 107.1 735 25.0
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 1.3e-20 105.9 176 35.8
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 6.3e-20 103.6 111 46.8
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.8e-19 102.1 153 35.9
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 4.1e-19 100.9 222 38.3
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 9.1e-19 99.8 797 21.8
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 1.6e-18 99.0 237 31.6
BcaC07g36863 Brassica carinata HOM05D005385 ORTHO05D006768 2.7e-18 98.2 76 73.7
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 2.7e-18 98.2 722 23.0
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 5.9e-18 97.1 166 37.3
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.3e-17 95.9 179 35.2
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 2.3e-17 95.1 333 29.1
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 5.0e-17 94.0 233 30.9
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 2.5e-16 91.7 740 22.8
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 5.5e-16 90.5 196 34.7
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 5.5e-16 90.5 142 43.0
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 4.7e-15 87.4 208 32.2
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.8e-14 85.5 146 43.2
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.2e-13 82.8 146 34.9
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 9.8e-13 79.7 194 30.9
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 1.3e-12 79.3 200 29.0
BcaB04g19303 Brassica carinata HOM05D005385 ORTHO05D006768 1.8e-11 75.5 53 71.7
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 1.7e-09 68.9 173 31.8
BcaB04g17601 Brassica carinata HOM05D005385 ORTHO05D039913 2.3e-09 68.6 45 71.1
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 2.3e-09 68.6 106 37.7
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 8.6e-09 66.6 167 35.3
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 8.6e-09 66.6 347 26.2
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.5e-08 65.9 163 35.0
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.5e-08 65.9 163 35.0
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 5.6e-08 63.9 111 38.7
BcaB05g22977 Brassica carinata HOM05D005385 ORTHO05D006768 4.7e-07 60.8 100 43.0


User provided reference genes

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