Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06875 Brassica carinata HOM05D001850 ORTHO05D002241 1.6e-73 279.3 137 100.0
BcaB02g06874 Brassica carinata HOM05D001850 ORTHO05D012467 8.7e-59 230.3 137 85.4
BcaB02g06872 Brassica carinata HOM05D001850 ORTHO05D012467 4.5e-39 164.9 79 100.0
C04p01710 Brassica napus HOM05D001850 ORTHO05D012467 2.6e-23 112.5 60 83.3
BolC4t21823H Brassica oleracea HOM05D001850 ORTHO05D012467 2.6e-23 112.5 60 83.3
BcaC05g24402 Brassica carinata HOM05D001850 ORTHO05D012467 3.8e-22 108.6 73 75.3
C05p03560 Brassica napus HOM05D001850 ORTHO05D012467 3.8e-22 108.6 73 75.3
BcaC05g24431 Brassica carinata HOM05D001850 ORTHO05D012467 5.0e-22 108.2 60 81.7
A05p01510 Brassica napus HOM05D001850 ORTHO05D012467 5.0e-22 108.2 60 81.7
BraA05t19147Z Brassica rapa HOM05D001850 ORTHO05D012467 6.5e-22 107.8 60 80.0
BolC5t29112H Brassica oleracea HOM05D001850 ORTHO05D012467 5.5e-21 104.8 60 81.7
BcaC05g24405 Brassica carinata HOM05D001850 ORTHO05D012467 7.2e-21 104.4 78 66.7
BolC5t29137H Brassica oleracea HOM05D001850 ORTHO05D012467 7.2e-21 104.4 78 66.7
BcaB02g06871 Brassica carinata HOM05D001850 ORTHO05D012467 1.6e-20 103.2 54 85.2
BcaB02g06873 Brassica carinata HOM05D001850 ORTHO05D012467 1.6e-20 103.2 54 85.2
A10p03910 Brassica napus HOM05D001850 ORTHO05D012467 2.7e-20 102.4 60 76.7
A10p03640 Brassica napus HOM05D001850 ORTHO05D002241 1.4e-19 100.1 79 65.8
BraA10t42666Z Brassica rapa HOM05D001850 ORTHO05D012467 1.4e-19 100.1 60 75.0
Thhalv10008905m.g Eutrema salsugineum HOM05D001850 ORTHO05D012467 2.0e-18 96.3 79 63.3
CARHR004780 Cardamine hirsuta HOM05D001850 ORTHO05D012467 2.7e-15 85.9 79 51.9
Sp1g04150 Schrenkiella parvula HOM05D001850 ORTHO05D012467 1.0e-14 84.0 54 68.5
AL1G15080 Arabidopsis lyrata HOM05D001850 ORTHO05D012467 2.2e-14 82.8 81 56.8
AT1G05291 Arabidopsis thaliana HOM05D001850 ORTHO05D012467 6.5e-14 81.3 80 56.2
Carub.0001s0459 Capsella rubella HOM05D001850 ORTHO05D012467 1.5e-13 80.1 78 48.7
BcaB02g10479 Brassica carinata HOM05D001850 ORTHO05D002241 8.0e-12 74.3 59 54.2
A05p13090 Brassica napus HOM05D001850 ORTHO05D002241 8.0e-12 74.3 59 54.2
C04p17340 Brassica napus HOM05D001850 ORTHO05D002241 8.0e-12 74.3 59 54.2
BolC4t23285H Brassica oleracea HOM05D001850 ORTHO05D002241 8.0e-12 74.3 59 54.2
BraA05t20248Z Brassica rapa HOM05D001850 ORTHO05D002241 8.0e-12 74.3 59 54.2
BcaC02g11336 Brassica carinata HOM05D001850 ORTHO05D002241 1.0e-11 73.9 59 54.2
Thhalv10017335m.g Eutrema salsugineum HOM05D001850 ORTHO05D002241 1.0e-11 73.9 59 54.2
MD09G1103300 Malus domestica HOM05D001850 ORTHO05D002241 1.0e-11 73.9 55 50.9
AL4G27670 Arabidopsis lyrata HOM05D001850 ORTHO05D002241 2.3e-11 72.8 59 52.5
AT2G32280 Arabidopsis thaliana HOM05D001850 ORTHO05D002241 2.3e-11 72.8 59 52.5
Sp4g14670 Schrenkiella parvula HOM05D001850 ORTHO05D002241 2.3e-11 72.8 57 54.4
Aa31LG5G4250 Aethionema arabicum HOM05D001850 ORTHO05D002241 3.0e-11 72.4 59 54.2
Oeu052536.2 Olea europaea HOM05D001850 ORTHO05D002241 3.0e-11 72.4 55 50.9
CiPaw.03G164100 Carya illinoinensis HOM05D001850 ORTHO05D002241 4.0e-11 72.0 55 47.3
A03p18100 Brassica napus HOM05D001850 ORTHO05D002241 5.2e-11 71.6 59 50.8
BraA03t11069Z Brassica rapa HOM05D001850 ORTHO05D002241 5.2e-11 71.6 59 50.8
CARHR126090 Cardamine hirsuta HOM05D001850 ORTHO05D002241 6.8e-11 71.2 59 50.8
FvH4_6g43740 Fragaria vesca HOM05D001850 ORTHO05D002241 6.8e-11 71.2 79 38.0
FAN02G1812 Fragaria x ananassa HOM05D001850 ORTHO05D002241 6.8e-11 71.2 79 38.0
FAN05G5371 Fragaria x ananassa HOM05D001850 ORTHO05D002241 6.8e-11 71.2 79 38.0
FAN09G1434 Fragaria x ananassa HOM05D001850 ORTHO05D002241 6.8e-11 71.2 79 38.0
FAN14G2170 Fragaria x ananassa HOM05D001850 ORTHO05D002241 6.8e-11 71.2 79 38.0
MD17G1091200 Malus domestica HOM05D001850 ORTHO05D002241 8.8e-11 70.9 55 45.5
C03p21130 Brassica napus HOM05D001850 ORTHO05D002241 1.2e-10 70.5 59 49.2
Carub.0004s1362 Capsella rubella HOM05D001850 ORTHO05D002241 1.2e-10 70.5 59 49.2
BcaC01g05913 Brassica carinata HOM05D001850 ORTHO05D002241 1.5e-10 70.1 59 49.2
RcHm_v2.0_Chr2g0160471 Rosa chinensis HOM05D001850 ORTHO05D002241 2.0e-10 69.7 55 43.6
Sopen07g025810 Solanum pennellii HOM05D001850 ORTHO05D002241 2.6e-10 69.3 61 42.6
CAN.G86.23 Capsicum annuum HOM05D001850 ORTHO05D002241 3.4e-10 68.9 55 45.5
Prupe.3G222400 Prunus persica HOM05D001850 ORTHO05D002241 3.4e-10 68.9 55 45.5
PGSC0003DMG400026165 Solanum tuberosum HOM05D001850 ORTHO05D002241 3.4e-10 68.9 55 45.5
Solyc07g052910.3 Solanum lycopersicum HOM05D001850 ORTHO05D002241 4.4e-10 68.6 55 45.5
Sopen07g026460 Solanum pennellii HOM05D001850 ORTHO05D002241 4.4e-10 68.6 55 45.5
CANSAT64G2082 Cannabis sativa HOM05D001850 ORTHO05D002241 5.7e-10 68.2 79 36.7
Ca_01566_v3 Cicer arietinum L. HOM05D001850 ORTHO05D002241 7.5e-10 67.8 55 47.3
TPR.G30804 Trifolium pratense HOM05D001850 ORTHO05D002241 7.5e-10 67.8 55 47.3
Lj3g0023668 Lotus japonicus HOM05D001850 ORTHO05D002241 9.8e-10 67.4 55 47.3
Psat5g265880 Pisum sativum HOM05D001850 ORTHO05D002241 9.8e-10 67.4 55 47.3
THA.LOC104800977 Tarenaya hassleriana HOM05D001850 ORTHO05D002241 9.8e-10 67.4 59 45.8
Migut.M00385 Erythranthe guttata HOM05D001850 ORTHO05D002241 1.7e-09 66.6 57 45.6
Lj8A121G26 Lonicera japonica HOM05D001850 ORTHO05D002241 1.7e-09 66.6 57 45.6
Actinidia30502 Actinidia chinensis HOM05D001850 ORTHO05D002241 2.2e-09 66.2 52 50.0
Glyma.13G305100 Glycine max HOM05D001850 ORTHO05D002241 2.2e-09 66.2 55 49.1
QL08p034224 Quercus lobata HOM05D001850 ORTHO05D002241 2.2e-09 66.2 55 43.6
SGA_v2.0_scaffold159G37594 Striga asiatica HOM05D001850 ORTHO05D002241 2.2e-09 66.2 55 45.5
Haze_12962 Corylus avellana HOM05D001850 ORTHO05D002241 2.8e-09 65.9 55 41.8
Duzib248G0344 Durio zibethinus HOM05D001850 ORTHO05D002241 2.8e-09 65.9 55 43.6
Migut.H01207 Erythranthe guttata HOM05D001850 ORTHO05D002241 2.8e-09 65.9 71 38.0
Hma1.2p1_2477F.1_g322890 Hydrangea macrophylla HOM05D001850 ORTHO05D002241 2.8e-09 65.9 72 41.7
Lj1A753T61 Lonicera japonica HOM05D001850 ORTHO05D002241 2.8e-09 65.9 61 41.0
SalBow7G1123 Salvia bowleyana HOM05D001850 ORTHO05D002241 2.8e-09 65.9 57 43.9
CAN.G80.5 Capsicum annuum HOM05D001850 ORTHO05D002241 3.7e-09 65.5 55 43.6
Cfa014459 Carpinus fangiana HOM05D001850 ORTHO05D002241 3.7e-09 65.5 55 41.8
Cc05_g05300 Coffea canephora HOM05D001850 ORTHO05D002241 3.7e-09 65.5 55 43.6
Dinv10902 Davidia involucrata HOM05D001850 ORTHO05D002241 3.7e-09 65.5 55 43.6
Nitab4.5_0001134g0140 Nicotiana tabacum HOM05D001850 ORTHO05D002241 3.7e-09 65.5 55 43.6
Nitab4.5_0003429g0040 Nicotiana tabacum HOM05D001850 ORTHO05D002241 3.7e-09 65.5 55 43.6
Sopen12g001630 Solanum pennellii HOM05D001850 ORTHO05D002241 3.7e-09 65.5 55 45.5
SGA_v2.0_scaffold34G13878 Striga asiatica HOM05D001850 ORTHO05D002241 3.7e-09 65.5 55 45.5
CsaV3_2G035290 Cucumis sativus L. HOM05D001850 ORTHO05D002241 4.8e-09 65.1 55 43.6
Duzib132G1271 Durio zibethinus HOM05D001850 ORTHO05D002241 4.8e-09 65.1 55 43.6
Solyc12g005700.2 Solanum lycopersicum HOM05D001850 ORTHO05D002241 4.8e-09 65.1 55 43.6
MSTRG.12294 Avicennia marina HOM05D001850 ORTHO05D002241 6.3e-09 64.7 68 39.7
MELO3C019224.2 Cucumis melo HOM05D001850 ORTHO05D002241 6.3e-09 64.7 55 43.6
Eucgr.A01737 Eucalyptus grandis HOM05D001850 ORTHO05D002241 6.3e-09 64.7 79 35.4
Thecc.02G164100 Theobroma cacao HOM05D001850 ORTHO05D002241 6.3e-09 64.7 55 41.8
vmacro09319 Vaccinium macrocarpon HOM05D001850 ORTHO05D002241 6.3e-09 64.7 52 50.0
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 8.3e-09 64.3 52 50.0
ClCG02G008330 Citrullus lanatus HOM05D001850 ORTHO05D002241 8.3e-09 64.3 55 43.6
PGR042G2347 Punica granatum HOM05D001850 ORTHO05D002241 8.3e-09 64.3 55 41.8
Rhsim04G0057400 Rhododendron simsii HOM05D001850 ORTHO05D002241 8.3e-09 64.3 52 50.0
Lalb_Chr14g0375611 Lupinus albus HOM05D001850 ORTHO05D002241 1.1e-08 63.9 55 45.5
Oeu017971.1 Olea europaea HOM05D001850 ORTHO05D002241 1.1e-08 63.9 55 43.6
Atru.chr6.3120 Acer truncatum HOM05D001850 ORTHO05D002241 1.4e-08 63.5 55 41.8
CSS0026437 Camellia sinensis var. sinensis HOM05D001850 ORTHO05D002241 1.4e-08 63.5 52 48.1
CSS0047257 Camellia sinensis var. sinensis HOM05D001850 ORTHO05D002241 1.4e-08 63.5 52 48.1
Eucgr.A01738 Eucalyptus grandis HOM05D001850 ORTHO05D002241 1.4e-08 63.5 79 36.7
Gohir.D12G139400 Gossypium hirsutum HOM05D001850 ORTHO05D002241 1.4e-08 63.5 55 41.8
Gorai.008G150400 Gossypium raimondii HOM05D001850 ORTHO05D002241 1.4e-08 63.5 55 41.8
arahy.Tifrunner.gnm1.ann1.GRPF7N Arachis hypogaea HOM05D001850 ORTHO05D002241 1.8e-08 63.2 59 42.4
Psat7g197960 Pisum sativum HOM05D001850 ORTHO05D002241 1.8e-08 63.2 55 41.8
MSTRG.14841 Avicennia marina HOM05D001850 ORTHO05D002241 2.4e-08 62.8 55 41.8
Potri.017G040900 Populus trichocarpa HOM05D001850 ORTHO05D002241 2.4e-08 62.8 55 40.0
Sabra07G0097100 Salix brachista HOM05D001850 ORTHO05D002241 2.4e-08 62.8 55 41.8
Gohir.A13G058500 Gossypium hirsutum HOM05D001850 ORTHO05D002241 3.1e-08 62.4 59 39.0
Gohir.D13G063500 Gossypium hirsutum HOM05D001850 ORTHO05D002241 3.1e-08 62.4 59 39.0
Gorai.013G071900 Gossypium raimondii HOM05D001850 ORTHO05D002241 3.1e-08 62.4 59 39.0
Medtr4g045673 Medicago truncatula HOM05D001850 ORTHO05D002241 3.1e-08 62.4 63 41.3
Oeu011068.1 Olea europaea HOM05D001850 ORTHO05D002241 3.1e-08 62.4 55 41.8
Phvul.005G112300 Phaseolus vulgaris HOM05D001850 ORTHO05D002241 3.1e-08 62.4 55 45.5
Rhsim06G0155800 Rhododendron simsii HOM05D001850 ORTHO05D002241 3.1e-08 62.4 52 46.2
Sabra17G0027800 Salix brachista HOM05D001850 ORTHO05D002241 3.1e-08 62.4 55 40.0
TWI18G1331 Tripterygium wilfordii HOM05D001850 ORTHO05D002241 3.1e-08 62.4 55 40.0
TWI36G0213 Tripterygium wilfordii HOM05D001850 ORTHO05D002241 3.1e-08 62.4 55 40.0
Sed0006474 Sechium edule HOM05D001850 ORTHO05D002241 4.1e-08 62.0 55 40.0
Hund08070 Selenicereus undatus HOM05D001850 ORTHO05D002241 4.1e-08 62.0 51 49.0
Cfa014458 Carpinus fangiana HOM05D001850 ORTHO05D002241 5.4e-08 61.6 55 41.8
Glyma.12G197000 Glycine max HOM05D001850 ORTHO05D002241 5.4e-08 61.6 55 45.5
Manes.12G077300 Manihot esculenta HOM05D001850 ORTHO05D002241 5.4e-08 61.6 55 38.2
Potri.007G119600 Populus trichocarpa HOM05D001850 ORTHO05D002241 5.4e-08 61.6 55 41.8
arahy.Tifrunner.gnm1.ann1.NPPN3F Arachis hypogaea HOM05D001850 ORTHO05D002241 7.0e-08 61.2 59 40.7
Manes.13G074501 Manihot esculenta HOM05D001850 ORTHO05D002241 7.0e-08 61.2 57 40.4
Nitab4.5_0000404g0030 Nicotiana tabacum HOM05D001850 ORTHO05D002241 7.0e-08 61.2 55 40.0
VMungo1080G0062 Vigna mungo HOM05D001850 ORTHO05D002241 7.0e-08 61.2 55 43.6
VMungo1127G0002 Vigna mungo HOM05D001850 ORTHO05D002241 7.0e-08 61.2 63 44.4
Ciclev10016802m.g Citrus clementina HOM05D001850 ORTHO05D002241 9.1e-08 60.8 55 38.2
Glyma.06G301800 Glycine max HOM05D001850 ORTHO05D002241 9.1e-08 60.8 63 42.9
Peaxi162Scf00007g01416 Petunia axillaris HOM05D001850 ORTHO05D002241 9.1e-08 60.8 55 38.2
GSVIVG01030648001 Vitis vinifera HOM05D001850 ORTHO05D002241 9.1e-08 60.8 55 38.2
Cpa.g.sc8.252 Carica papaya HOM05D001850 ORTHO05D002241 1.2e-07 60.5 55 40.0
Glyma.12G102600 Glycine max HOM05D001850 ORTHO05D002241 1.2e-07 60.5 63 42.9
Gohir.A12G135280 Gossypium hirsutum HOM05D001850 ORTHO05D002241 1.2e-07 60.5 55 40.0
Medtr2g089050 Medicago truncatula HOM05D001850 ORTHO05D002241 1.2e-07 60.5 55 43.6
QL03p067636 Quercus lobata HOM05D001850 ORTHO05D002241 1.2e-07 60.5 55 40.0
TPR.G19050 Trifolium pratense HOM05D001850 ORTHO05D002241 1.6e-07 60.1 63 41.3
Phvul.011G107400 Phaseolus vulgaris HOM05D001850 ORTHO05D002241 2.0e-07 59.7 63 44.4
Lalb_Chr03g0028961 Lupinus albus HOM05D001850 ORTHO05D002241 5.9e-07 58.2 63 42.9
Peaxi162Scf00315g00099 Petunia axillaris HOM05D001850 ORTHO05D002241 5.9e-07 58.2 55 36.4
HanXRQChr05g0139671 Helianthus annuus HOM05D001850 ORTHO05D002241 7.7e-07 57.8 55 38.2
Nn1g06941 Nelumbo nucifera HOM05D001850 ORTHO05D002241 7.7e-07 57.8 59 37.3
Nitab4.5_0000780g0070 Nicotiana tabacum HOM05D001850 ORTHO05D002241 7.7e-07 57.8 55 38.2
Solyc05g046130.4 Solanum lycopersicum HOM05D001850 ORTHO05D002241 7.7e-07 57.8 55 38.2
Sopen05g027350 Solanum pennellii HOM05D001850 ORTHO05D002241 7.7e-07 57.8 55 38.2
PGSC0003DMG400013974 Solanum tuberosum HOM05D001850 ORTHO05D002241 7.7e-07 57.8 55 38.2
Lj3g0026531 Lotus japonicus HOM05D001850 ORTHO05D002241 1.0e-06 57.4 55 40.0
HanXRQChr10g0295471 Helianthus annuus HOM05D001850 ORTHO05D002241 1.7e-06 56.6 55 36.4
ECA236G2944 Erigeron canadensis HOM05D001850 ORTHO05D002241 2.3e-06 56.2 59 37.3
PSO675G8180 Papaver somniferum HOM05D001850 ORTHO05D002241 2.3e-06 56.2 51 41.2
Sc12g0002460 Simmondsia chinensis HOM05D001850 ORTHO05D002241 2.3e-06 56.2 55 36.4
arahy.Tifrunner.gnm1.ann1.3MI1ZW Arachis hypogaea HOM05D001850 ORTHO05D002241 3.8e-06 55.5 55 40.0
arahy.Tifrunner.gnm1.ann1.WRD1HJ Arachis hypogaea HOM05D001850 ORTHO05D002241 3.8e-06 55.5 55 40.0
HPP92_012333 Vanilla planifolia HOM05D001850 ORTHO05D002241 3.8e-06 55.5 51 39.2
HPP92_012379 Vanilla planifolia HOM05D001850 ORTHO05D002241 3.8e-06 55.5 51 39.2
ECA246G1058 Erigeron canadensis HOM05D001850 ORTHO05D002241 5.0e-06 55.1 59 33.9
Lsat_1_v5_gn_4_69180 Lactuca sativa HOM05D001850 ORTHO05D002241 5.0e-06 55.1 55 36.4
PSO541G0036 Papaver somniferum HOM05D001850 ORTHO05D002241 5.0e-06 55.1 51 41.2
unitig_699.g19610 Utricularia gibba HOM05D001850 ORTHO05D002241 5.0e-06 55.1 53 37.7
TAR629G1060 Trochodendron aralioides HOM05D001850 ORTHO05D002241 8.6e-06 54.3 55 36.4


User provided reference genes

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