Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06868 Brassica carinata HOM05D004126 ORTHO05D004818 1.2e-59 233.0 123 100.0
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 2.5e-12 75.9 36 100.0
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 3.2e-12 75.5 36 97.2
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 3.2e-12 75.5 36 97.2
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 3.2e-12 75.5 36 97.2
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 3.2e-12 75.5 36 97.2
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 3.2e-12 75.5 36 97.2
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 3.2e-12 75.5 36 97.2
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 3.2e-12 75.5 36 97.2
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 3.2e-12 75.5 36 97.2
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 3.2e-12 75.5 36 97.2
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 4.2e-12 75.1 36 97.2
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 5.5e-12 74.7 36 97.2
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 7.2e-12 74.3 36 94.4
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 7.2e-12 74.3 36 94.4
Thhalv10008150m.g Eutrema salsugineum HOM05D002507 ORTHO05D003045 7.2e-12 74.3 64 71.9
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 9.4e-12 73.9 36 97.2
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 9.4e-12 73.9 36 97.2
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 9.4e-12 73.9 36 97.2
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 9.4e-12 73.9 36 97.2
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 9.4e-12 73.9 36 97.2
Sp1g04170 Schrenkiella parvula HOM05D002507 ORTHO05D003045 9.4e-12 73.9 120 45.8
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 1.2e-11 73.6 36 94.4
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 1.6e-11 73.2 36 94.4
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 2.7e-11 72.4 36 94.4
BraA09t42079Z Brassica rapa HOM05D002507 ORTHO05D003045 1.8e-10 69.7 63 66.7
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 2.3e-10 69.3 36 91.7
BcaC07g42137 Brassica carinata HOM05D002507 ORTHO05D003045 1.1e-09 67.0 118 42.4
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 2.0e-09 66.2 35 82.9
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 4.4e-09 65.1 36 77.8
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 4.4e-09 65.1 35 85.7
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 4.4e-09 65.1 35 82.9
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 5.7e-09 64.7 35 80.0
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 9.7e-09 63.9 34 91.2
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 1.3e-08 63.5 35 80.0
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 1.3e-08 63.5 34 85.3
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 1.7e-08 63.2 35 80.0
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 2.2e-08 62.8 35 80.0
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 2.8e-08 62.4 35 77.1
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 2.8e-08 62.4 36 75.0
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 2.8e-08 62.4 36 80.6
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 3.7e-08 62.0 34 76.5
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 3.7e-08 62.0 35 74.3
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 3.7e-08 62.0 33 81.8
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 3.7e-08 62.0 36 72.2
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 3.7e-08 62.0 35 74.3
BcaNung06624 Brassica carinata HOM05D002507 ORTHO05D003045 4.8e-08 61.6 123 41.5
C08p51780 Brassica napus HOM05D002507 ORTHO05D003102 4.8e-08 61.6 123 41.5
BolC8t52708H Brassica oleracea HOM05D002507 ORTHO05D003045 4.8e-08 61.6 123 41.5
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 4.8e-08 61.6 34 79.4
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 4.8e-08 61.6 36 72.2
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 4.8e-08 61.6 35 74.3
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 4.8e-08 61.6 34 76.5
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 6.3e-08 61.2 35 74.3
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 6.3e-08 61.2 35 80.0
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 6.3e-08 61.2 36 75.0
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 6.3e-08 61.2 35 74.3
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 8.2e-08 60.8 33 78.8
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 8.2e-08 60.8 33 81.8
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 8.2e-08 60.8 35 77.1
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 8.2e-08 60.8 35 74.3
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 8.2e-08 60.8 36 72.2
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 8.2e-08 60.8 36 77.8
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.1e-07 60.5 36 75.0
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 1.1e-07 60.5 35 74.3
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 1.1e-07 60.5 35 71.4
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 1.1e-07 60.5 35 77.1
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 1.4e-07 60.1 35 74.3
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 1.4e-07 60.1 36 75.0
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 1.8e-07 59.7 35 74.3
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 1.8e-07 59.7 35 80.0
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 1.8e-07 59.7 35 71.4
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 1.8e-07 59.7 35 77.1
A09p67500 Brassica napus HOM05D002507 ORTHO05D003102 2.4e-07 59.3 63 66.7
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 2.4e-07 59.3 36 69.4
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 2.4e-07 59.3 36 72.2
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 2.4e-07 59.3 35 71.4
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 2.4e-07 59.3 35 74.3
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 2.4e-07 59.3 36 72.2
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 2.4e-07 59.3 35 71.4
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 3.1e-07 58.9 35 68.6
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 4.1e-07 58.5 35 71.4
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 4.1e-07 58.5 35 71.4
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 4.1e-07 58.5 35 71.4
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 4.1e-07 58.5 35 68.6
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 4.1e-07 58.5 35 71.4
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 4.1e-07 58.5 33 72.7
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 4.1e-07 58.5 33 72.7
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 4.1e-07 58.5 36 66.7
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 4.1e-07 58.5 35 71.4
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 5.3e-07 58.2 35 68.6
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 5.3e-07 58.2 36 72.2
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 5.3e-07 58.2 35 71.4
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 7.0e-07 57.8 35 68.6
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 7.0e-07 57.8 35 68.6
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 7.0e-07 57.8 35 68.6
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 7.0e-07 57.8 36 72.2
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 7.0e-07 57.8 34 70.6
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 7.0e-07 57.8 34 76.5
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 9.1e-07 57.4 33 69.7
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 9.1e-07 57.4 33 69.7
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 9.1e-07 57.4 35 68.6
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 9.1e-07 57.4 35 68.6
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 9.1e-07 57.4 33 75.8
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 1.2e-06 57.0 35 71.4
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 1.2e-06 57.0 35 74.3
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 1.5e-06 56.6 35 68.6
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.5e-06 56.6 35 68.6
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 1.5e-06 56.6 35 71.4
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 1.5e-06 56.6 35 68.6
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.0e-06 56.2 35 68.6
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.0e-06 56.2 35 68.6
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.0e-06 56.2 35 68.6
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.0e-06 56.2 35 68.6
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 2.6e-06 55.8 35 65.7
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 3.4e-06 55.5 35 65.7
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 3.4e-06 55.5 35 65.7
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 3.4e-06 55.5 33 72.7
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 3.4e-06 55.5 34 67.6
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 4.5e-06 55.1 35 71.4
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 4.5e-06 55.1 33 75.8
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 4.5e-06 55.1 33 75.8
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 5.9e-06 54.7 35 68.6
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 5.9e-06 54.7 35 68.6
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 5.9e-06 54.7 35 68.6
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 5.9e-06 54.7 33 66.7
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 5.9e-06 54.7 34 67.6
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 5.9e-06 54.7 35 62.9
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 7.7e-06 54.3 33 66.7
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 7.7e-06 54.3 32 84.4
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 7.7e-06 54.3 33 72.7
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 7.7e-06 54.3 36 58.3
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 7.7e-06 54.3 35 68.6
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 7.7e-06 54.3 35 68.6


User provided reference genes

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