Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 3.1e-137 491.9 266 100.0
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 4.1e-121 438.3 275 89.1
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 4.1e-121 438.3 275 89.1
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 1.3e-119 433.3 275 88.4
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 5.7e-115 417.9 275 86.5
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 5.7e-115 417.9 275 86.5
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 2.3e-92 342.8 277 66.8
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 1.1e-84 317.4 266 65.8
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 5.1e-79 298.5 274 60.2
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 1.2e-77 293.9 273 60.4
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 2.1e-77 293.1 277 63.2
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 1.4e-76 290.4 274 62.8
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 3.1e-76 289.3 147 95.2
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 7.6e-67 258.1 272 54.8
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 1.8e-52 210.3 245 54.3
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 4.2e-17 92.8 144 34.0
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 4.7e-16 89.4 152 34.2
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 4.7e-16 89.4 244 32.4
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 4.7e-16 89.4 155 31.6
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 6.1e-16 89.0 168 33.9
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 1.8e-15 87.4 224 29.0
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 3.0e-15 86.7 160 34.4
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 3.9e-15 86.3 256 30.9
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 5.2e-15 85.9 140 36.4
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 5.2e-15 85.9 257 30.7
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 5.2e-15 85.9 259 30.5
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 6.7e-15 85.5 151 33.8
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 8.8e-15 85.1 240 29.2
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 2.6e-14 83.6 204 27.5
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 2.6e-14 83.6 233 32.6
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 4.4e-14 82.8 226 29.2
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 5.7e-14 82.4 226 29.6
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 5.7e-14 82.4 207 28.5
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 7.4e-14 82.0 160 33.8
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 7.4e-14 82.0 236 32.2
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 9.7e-14 81.6 204 29.4
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 1.7e-13 80.9 242 30.2
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 3.7e-13 79.7 147 33.3
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 4.8e-13 79.3 234 27.4
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 4.8e-13 79.3 171 30.4
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 6.3e-13 79.0 211 27.5
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 8.2e-13 78.6 216 30.1
FvH4_4g16290 Fragaria vesca HOM05D007633 ORTHO05D008817 1.1e-12 78.2 244 27.9
FAN12G0707 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.1e-12 78.2 244 27.9
FAN02G3335 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.4e-12 77.8 242 28.1
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 1.4e-12 77.8 140 31.4
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 1.4e-12 77.8 140 31.4
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 1.4e-12 77.8 244 27.0
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 2.4e-12 77.0 208 29.8
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 5.3e-12 75.9 142 28.9
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 5.3e-12 75.9 152 32.9
FAN22G0362 Fragaria x ananassa HOM05D007633 ORTHO05D008817 2.0e-11 73.9 242 28.1
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 2.6e-11 73.6 221 26.7
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 4.5e-11 72.8 234 26.9
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 5.9e-11 72.4 222 26.6
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 5.9e-11 72.4 243 28.8
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 7.7e-11 72.0 211 28.9
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 7.7e-11 72.0 246 27.6
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 1.0e-10 71.6 239 25.9
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 1.3e-10 71.2 234 28.2
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 1.3e-10 71.2 243 26.3
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 1.7e-10 70.9 241 28.6
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 5.0e-10 69.3 221 28.1
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 6.5e-10 68.9 169 29.6
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 6.5e-10 68.9 234 28.2
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 6.5e-10 68.9 216 27.3
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 1.5e-09 67.8 170 28.8
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 2.5e-09 67.0 225 28.9
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 3.2e-09 66.6 225 28.9
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 4.2e-09 66.2 223 30.0
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 1.2e-08 64.7 225 28.4
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 1.6e-08 64.3 219 25.1
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 4.7e-08 62.8 233 29.2
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 6.1e-08 62.4 141 31.2
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 8.0e-08 62.0 211 29.4
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 1.8e-07 60.8 207 25.1
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 1.8e-07 60.8 170 28.8
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 1.8e-07 60.8 148 31.1
FAN07G1430 Fragaria x ananassa HOM05D007633 ORTHO05D008817 3.0e-07 60.1 187 27.8
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.5e-06 57.8 231 28.1
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 1.5e-06 57.8 139 30.9
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 2.6e-06 57.0 239 27.2
Cpa.g.sc58.94 Carica papaya HOM05D007633 ORTHO05D008817 3.3e-06 56.6 65 38.5
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 7.5e-06 55.5 80 37.5
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 7.5e-06 55.5 139 26.6
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 7.5e-06 55.5 130 33.1


User provided reference genes

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