Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06801 Brassica carinata HOM05D007374 ORTHO05D009283 2.7e-136 488.8 272 100.0
C05p04770 Brassica napus HOM05D007374 ORTHO05D009283 2.7e-120 435.6 281 90.4
BraA10t42783Z Brassica rapa HOM05D007374 ORTHO05D009283 7.9e-120 434.1 275 91.3
A10p05160 Brassica napus HOM05D007374 ORTHO05D009283 5.7e-118 427.9 273 90.8
BolC5t29248H Brassica oleracea HOM05D007374 ORTHO05D009283 1.5e-115 419.9 281 86.8
Sp1g05270 Schrenkiella parvula HOM05D007374 ORTHO05D009283 1.3e-109 400.2 279 83.5
Thhalv10009532m.g Eutrema salsugineum HOM05D007374 ORTHO05D009283 6.1e-104 381.3 277 81.2
BcaC04g23554 Brassica carinata HOM05D007374 ORTHO05D009283 8.8e-103 377.5 274 81.8
Carub.0001s0588 Capsella rubella HOM05D007374 ORTHO05D009283 1.0e-98 364.0 279 75.3
AL1G16540 Arabidopsis lyrata HOM05D007374 ORTHO05D009283 1.6e-96 356.7 280 77.5
AT1G06510 Arabidopsis thaliana HOM05D007374 ORTHO05D009283 1.1e-92 344.0 279 73.8
Aa31LG1G7610 Aethionema arabicum HOM05D007374 ORTHO05D009283 2.7e-59 233.0 273 57.5
TAR627G0951 Trochodendron aralioides HOM05D007374 ORTHO05D009283 5.9e-59 231.9 275 52.7
vmacro01388 Vaccinium macrocarpon HOM05D007374 ORTHO05D009283 3.6e-56 222.6 275 52.7
COL.COLO4_00303 Corchorus olitorius HOM05D007374 ORTHO05D009283 4.7e-56 222.2 287 51.2
QL08p044444 Quercus lobata HOM05D007374 ORTHO05D009283 4.7e-56 222.2 284 50.0
Ciclev10032166m.g Citrus clementina HOM05D007374 ORTHO05D009283 2.0e-54 216.9 251 54.2
Eucgr.A01989 Eucalyptus grandis HOM05D007374 ORTHO05D009283 1.3e-53 214.2 284 47.9
Gohir.A05G379500 Gossypium hirsutum HOM05D007374 ORTHO05D009283 2.2e-53 213.4 284 50.7
LjContig00049g0002262 Lotus japonicus HOM05D007374 ORTHO05D009283 2.9e-53 213.0 266 48.9
Rhsim12G0085200 Rhododendron simsii HOM05D007374 ORTHO05D009283 3.7e-53 212.6 267 50.2
Cfa021554 Carpinus fangiana HOM05D007374 ORTHO05D009283 1.4e-52 210.7 263 51.3
PGSC0003DMG400021285 Solanum tuberosum HOM05D007374 ORTHO05D009283 1.4e-52 210.7 259 51.4
Atru.chr6.2078 Acer truncatum HOM05D007374 ORTHO05D009283 1.9e-52 210.3 289 48.4
FAN14G0493 Fragaria x ananassa HOM05D007374 ORTHO05D009283 1.9e-52 210.3 270 49.3
Gorai.012G040800 Gossypium raimondii HOM05D007374 ORTHO05D009283 1.9e-52 210.3 282 50.4
PGR042G1022 Punica granatum HOM05D007374 ORTHO05D009283 1.9e-52 210.3 257 51.8
Sopen10g003640 Solanum pennellii HOM05D007374 ORTHO05D009283 3.2e-52 209.5 259 51.0
FvH4_6g38360 Fragaria vesca HOM05D007374 ORTHO05D009283 4.1e-52 209.1 270 48.9
Glyma.02G285800 Glycine max HOM05D007374 ORTHO05D009283 5.4e-52 208.8 261 49.0
CAN.G2018.2 Capsicum annuum HOM05D007374 ORTHO05D009283 7.0e-52 208.4 274 48.9
Gohir.D04G035900 Gossypium hirsutum HOM05D007374 ORTHO05D009283 7.0e-52 208.4 282 50.0
VMungo0647G1819 Vigna mungo HOM05D007374 ORTHO05D009283 2.0e-51 206.8 258 50.0
Prupe.3G174200 Prunus persica HOM05D007374 ORTHO05D009283 2.7e-51 206.5 267 49.4
Solyc10g007730.3 Solanum lycopersicum HOM05D007374 ORTHO05D009283 2.7e-51 206.5 259 51.0
Nn4g26487 Nelumbo nucifera HOM05D007374 ORTHO05D009283 6.0e-51 205.3 283 48.4
Nitab4.5_0002209g0060 Nicotiana tabacum HOM05D007374 ORTHO05D009283 6.0e-51 205.3 302 46.7
Thecc.01G163300 Theobroma cacao HOM05D007374 ORTHO05D009283 6.0e-51 205.3 287 48.8
MD17G1138200 Malus domestica HOM05D007374 ORTHO05D009283 1.7e-50 203.8 285 48.4
TPR.G12560 Trifolium pratense HOM05D007374 ORTHO05D009283 1.7e-50 203.8 261 47.9
Cpa.g.sc1195.1 Carica papaya HOM05D007374 ORTHO05D009283 3.9e-50 202.6 278 50.0
CiPaw.03G190900 Carya illinoinensis HOM05D007374 ORTHO05D009283 5.0e-50 202.2 282 47.5
Psat2g016160 Pisum sativum HOM05D007374 ORTHO05D009283 6.6e-50 201.8 288 45.5
Dinv02438 Davidia involucrata HOM05D007374 ORTHO05D009283 3.3e-49 199.5 271 48.0
Aqoxy4G00135 Aquilegia oxysepala HOM05D007374 ORTHO05D009283 5.6e-49 198.7 288 45.5
Sed0010749 Sechium edule HOM05D007374 ORTHO05D009283 7.3e-49 198.4 253 49.4
Glyma.14G028800 Glycine max HOM05D007374 ORTHO05D009283 1.2e-48 197.6 263 48.7
Lalb_Chr10g0106631 Lupinus albus HOM05D007374 ORTHO05D009283 1.6e-48 197.2 255 47.5
GSVIVG01020866001 Vitis vinifera HOM05D007374 ORTHO05D009283 1.6e-48 197.2 257 51.4
Medtr5g091560 Medicago truncatula HOM05D007374 ORTHO05D009283 2.1e-48 196.8 291 44.0
Potri.005G203100 Populus trichocarpa HOM05D007374 ORTHO05D009283 4.7e-48 195.7 278 47.8
Phvul.008G231728 Phaseolus vulgaris HOM05D007374 ORTHO05D009283 1.1e-47 194.5 258 48.1
Sabra05G0154300 Salix brachista HOM05D007374 ORTHO05D009283 1.4e-47 194.1 278 46.0
CARHR006130 Cardamine hirsuta HOM05D007374 ORTHO05D009283 1.8e-47 193.7 162 70.4
Hund08257 Selenicereus undatus HOM05D007374 ORTHO05D009283 1.8e-47 193.7 255 50.2
ECA234G2656 Erigeron canadensis HOM05D000461 ORTHO05D001840 4.0e-47 192.6 293 44.7
Cc05_g09580 Coffea canephora HOM05D007374 ORTHO05D009283 6.8e-47 191.8 264 47.7
AUR62015143 Chenopodium quinoa HOM05D007374 ORTHO05D009283 4.4e-46 189.1 264 49.2
CsaV3_7G022640 Cucumis sativus L. HOM05D007374 ORTHO05D009283 7.5e-46 188.3 260 45.0
arahy.Tifrunner.gnm1.ann1.PL1TQM Arachis hypogaea HOM05D007374 ORTHO05D009283 9.8e-46 188.0 259 45.9
Migut.M00488 Erythranthe guttata HOM05D007374 ORTHO05D009283 9.8e-46 188.0 240 50.4
RcHm_v2.0_Chr2g0151671 Rosa chinensis HOM05D007374 ORTHO05D009283 9.8e-46 188.0 237 51.5
FAN05G2216 Fragaria x ananassa HOM05D007374 ORTHO05D009283 1.3e-45 187.6 315 41.9
MELO3C012638.2 Cucumis melo HOM05D007374 ORTHO05D009283 1.7e-45 187.2 261 46.4
HanXRQChr01g0028771 Helianthus annuus HOM05D007374 ORTHO05D009283 2.2e-45 186.8 266 44.0
ClCG09G022490 Citrullus lanatus HOM05D007374 ORTHO05D009283 2.9e-45 186.4 260 46.5
FAN09G2358 Fragaria x ananassa HOM05D007374 ORTHO05D009283 3.7e-45 186.0 315 41.6
arahy.Tifrunner.gnm1.ann1.G50Y2D Arachis hypogaea HOM05D007374 ORTHO05D009283 1.9e-44 183.7 260 46.2
Lsat_1_v5_gn_4_26980 Lactuca sativa HOM05D007374 ORTHO05D009283 4.1e-44 182.6 240 46.7
AUR62017602 Chenopodium quinoa HOM05D007374 ORTHO05D009283 7.1e-44 181.8 264 47.7
FAN02G3372 Fragaria x ananassa HOM05D007374 ORTHO05D009283 9.2e-44 181.4 334 40.1
Oeu005608.1 Olea europaea HOM05D007374 ORTHO05D009283 1.2e-43 181.0 240 49.2
Peaxi162Scf00035g00262 Petunia axillaris HOM05D007374 ORTHO05D009283 1.6e-43 180.6 307 44.6
DCAR_009800 Daucus carota HOM05D007374 ORTHO05D009283 3.5e-43 179.5 265 43.8
CDE02G0809 Ceratophyllum demersum HOM05D007374 ORTHO05D009283 3.9e-42 176.0 261 42.9
SGA_v2.0_scaffold70G23631 Striga asiatica HOM05D007374 ORTHO05D009283 8.6e-42 174.9 245 48.6
EL10Ac9g22854 Beta vulgaris HOM05D007374 ORTHO05D009283 7.3e-41 171.8 271 42.1
Ca_30616_v3 Cicer arietinum L. HOM05D007374 ORTHO05D009283 8.1e-40 168.3 233 45.1
Haze_13514 Corylus avellana HOM05D007374 ORTHO05D009283 1.8e-39 167.2 229 48.5
Ah.01g013460 Amaranthus hybridus HOM05D007374 ORTHO05D009283 2.6e-38 163.3 258 46.9
Lj1A605T43 Lonicera japonica HOM05D007374 ORTHO05D009283 7.6e-38 161.8 228 46.9
MSTRG.15040 Avicennia marina HOM05D007374 ORTHO05D009283 2.7e-35 153.3 263 41.1
Nitab4.5_0003104g0030 Nicotiana tabacum HOM05D007374 ORTHO05D009283 8.6e-34 148.3 210 50.0
HPP92_024519 Vanilla planifolia HOM05D007374 ORTHO05D009283 2.1e-32 143.7 262 38.5
HPP92_024591 Vanilla planifolia HOM05D007374 ORTHO05D009283 2.1e-32 143.7 247 38.9
Ca_06277_v3 Cicer arietinum L. HOM05D007374 ORTHO05D009283 1.8e-31 140.6 214 42.1
LjContig00141g0020215 Lotus japonicus HOM05D007374 ORTHO05D009283 2.4e-31 140.2 238 39.9
CDE09G1208 Ceratophyllum demersum HOM05D007374 ORTHO05D009283 8.4e-29 131.7 232 39.2
QL08p044527 Quercus lobata HOM05D007374 ORTHO05D009283 1.3e-26 124.4 121 62.0
Os01g0696000 Oryza sativa ssp. japonica HOM05D007374 ORTHO05D009283 3.0e-26 123.2 279 35.1
Actinidia00867 Actinidia chinensis HOM05D007374 ORTHO05D009283 9.6e-25 118.2 88 75.0
SalBow8G1446 Salvia bowleyana HOM05D007374 ORTHO05D009283 1.3e-24 117.9 103 66.0
unitig_746.g26685 Utricularia gibba HOM05D002434 ORTHO05D002743 1.3e-24 117.9 200 41.0
MD09G1150800 Malus domestica HOM05D007374 ORTHO05D009283 2.4e-23 113.6 177 47.5
HanXRQChr17g0565851 Helianthus annuus HOM05D007374 ORTHO05D009283 1.7e-21 107.5 142 48.6
Sc06g0007570 Simmondsia chinensis HOM05D007374 ORTHO05D009283 3.8e-21 106.3 192 38.5
Zm00001eb155870 Zea mays HOM05D007374 ORTHO05D009283 8.4e-21 105.1 252 33.3
Pp3c6_23840 Physcomitrium patens HOM05D007374 ORTHO05D009283 2.5e-17 93.6 142 46.5
Hma1.2p1_0081F.1_g042230 Hydrangea macrophylla HOM05D007374 ORTHO05D009283 8.1e-16 88.6 76 64.5
Actinidia00868 Actinidia chinensis HOM05D007374 ORTHO05D009283 5.1e-10 69.3 69 52.2
CBR_g17125 Chara braunii HOM05D007374 ORTHO05D009283 4.8e-08 62.8 95 41.1
QL08p044531 Quercus lobata HOM05D007374 ORTHO05D009283 4.8e-08 62.8 117 40.2
HanXRQChr14g0433321 Helianthus annuus HOM05D007374 ORTHO05D009283 8.1e-08 62.0 80 45.0
Mapoly0086s0079 Marchantia polymorpha HOM05D007374 ORTHO05D009283 3.1e-07 60.1 110 38.2


User provided reference genes

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