Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 7.2e-25 116.3 54 100.0
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 7.2e-25 116.3 54 100.0
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 7.2e-25 116.3 54 100.0
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 7.2e-25 116.3 54 100.0
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 7.2e-25 116.3 54 100.0
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 7.2e-25 116.3 54 100.0
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 7.2e-25 116.3 54 100.0
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 7.2e-25 116.3 54 100.0
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 7.2e-25 116.3 54 100.0
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 7.2e-25 116.3 54 100.0
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 2.7e-24 114.4 53 98.1
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 2.3e-23 111.3 53 94.3
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 5.2e-23 110.2 53 94.3
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 5.2e-23 110.2 53 94.3
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 5.2e-23 110.2 53 94.3
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 5.7e-22 106.7 54 88.9
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 5.7e-22 106.7 54 88.9
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 5.7e-22 106.7 54 88.9
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 5.7e-22 106.7 54 88.9
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 7.5e-22 106.3 54 87.0
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 9.8e-22 105.9 53 86.8
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 1.7e-21 105.1 53 86.8
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 2.8e-21 104.4 54 87.0
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 2.8e-21 104.4 54 87.0
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 6.3e-21 103.2 53 84.9
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.8e-20 101.7 54 83.3
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.1e-20 100.5 54 83.3
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 5.4e-20 100.1 53 84.9
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 5.4e-20 100.1 53 83.0
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 5.4e-20 100.1 53 83.0
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 9.1e-20 99.4 53 83.0
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 9.1e-20 99.4 53 81.1
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 9.1e-20 99.4 53 81.1
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 2.0e-19 98.2 53 79.2
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.0e-19 98.2 53 81.1
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 2.7e-19 97.8 53 81.1
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 3.5e-19 97.4 53 77.4
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.5e-19 97.4 54 81.5
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 3.5e-19 97.4 53 81.1
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 4.5e-19 97.1 53 79.2
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 4.5e-19 97.1 53 81.1
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 4.5e-19 97.1 53 81.1
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 4.5e-19 97.1 53 81.1
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 4.5e-19 97.1 53 79.2
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 7.7e-19 96.3 53 77.4
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 7.7e-19 96.3 54 77.8
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 7.7e-19 96.3 53 79.2
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 7.7e-19 96.3 52 82.7
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 7.7e-19 96.3 54 77.8
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 1.3e-18 95.5 54 77.8
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 1.3e-18 95.5 53 79.2
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 1.7e-18 95.1 53 79.2
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 1.7e-18 95.1 53 81.1
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.7e-18 95.1 53 77.4
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 2.3e-18 94.7 53 77.4
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 2.3e-18 94.7 53 83.0
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 2.3e-18 94.7 53 77.4
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 2.3e-18 94.7 52 80.8
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 2.3e-18 94.7 54 81.5
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 2.9e-18 94.4 53 79.2
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 2.9e-18 94.4 53 81.1
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 3.8e-18 94.0 54 74.1
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 5.0e-18 93.6 50 82.0
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 5.0e-18 93.6 53 79.2
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 6.6e-18 93.2 52 84.6
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 8.6e-18 92.8 53 73.6
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.6e-18 92.8 53 77.4
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.6e-18 92.8 53 77.4
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 8.6e-18 92.8 53 77.4
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 1.1e-17 92.4 53 75.5
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.5e-17 92.0 53 77.4
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 3.3e-17 90.9 53 73.6
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 3.3e-17 90.9 53 73.6
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 3.3e-17 90.9 54 74.1
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 4.2e-17 90.5 52 71.2
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 5.5e-17 90.1 52 75.0
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 5.5e-17 90.1 53 77.4
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 7.2e-17 89.7 52 75.0
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 1.6e-16 88.6 51 74.5
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.1e-16 88.2 52 75.0
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.8e-16 87.8 52 75.0
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 2.8e-16 87.8 52 75.0
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 3.6e-16 87.4 51 74.5
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 4.7e-16 87.0 52 75.0
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 8.0e-16 86.3 53 79.2
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 8.0e-16 86.3 48 77.1
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 3.0e-15 84.3 87 52.9
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 6.8e-15 83.2 53 77.4
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.5e-14 82.0 53 71.7
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 2.6e-14 81.3 51 76.5
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 3.4e-14 80.9 53 67.9
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 5.7e-14 80.1 53 71.7
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 7.5e-14 79.7 53 69.8
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 7.5e-14 79.7 53 69.8
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 9.8e-14 79.3 53 69.8
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 9.8e-14 79.3 53 69.8
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 2.2e-13 78.2 52 59.6
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 3.7e-13 77.4 52 65.4
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 4.9e-13 77.0 50 66.0
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 6.3e-13 76.6 47 76.6
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 8.3e-13 76.3 43 76.7
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 1.1e-12 75.9 53 69.8
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 1.4e-12 75.5 53 67.9
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 7.0e-12 73.2 47 74.5
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.2e-11 72.4 95 43.2
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.0e-10 67.0 31 93.5
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 5.0e-10 67.0 39 69.2
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 1.1e-09 65.9 44 70.5
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.5e-09 65.5 29 96.6
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 1.5e-09 65.5 50 54.0
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 4.3e-09 63.9 34 82.4
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 9.5e-09 62.8 31 83.9
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 1.6e-08 62.0 47 66.0
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 6.1e-08 60.1 28 92.9
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 6.1e-08 60.1 35 77.1
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.8e-07 58.5 80 48.8
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.8e-07 58.5 80 48.8
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 6.8e-07 56.6 53 54.7
AagrBONN_evm.TU.Sc2ySwM_228.3660 Anthoceros agrestis HOM05D006514 ORTHO05D008138 8.9e-07 56.2 42 57.1
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.2e-06 55.8 29 82.8
BolC4t25707H Brassica oleracea HOM05D040072 ORTHO05D033253 1.5e-06 55.5 52 55.8
Pp3c4_25750 Physcomitrium patens HOM05D006514 ORTHO05D008138 7.5e-06 53.1 44 52.3


User provided reference genes

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