Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 7.4e-43 176.8 89 100.0
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 7.2e-38 160.2 89 91.0
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 1.2e-37 159.5 89 91.0
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 1.2e-37 159.5 89 91.0
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 4.2e-30 134.4 90 80.0
AT1G06475 Arabidopsis thaliana HOM05D006911 ORTHO05D006663 4.0e-28 127.9 94 74.5
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 6.7e-28 127.1 91 73.6
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 5.9e-24 114.0 90 71.1
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 1.3e-23 112.8 95 68.4
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 2.9e-23 111.7 91 70.3
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 1.2e-16 89.7 91 56.0
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 5.7e-11 70.9 47 72.3
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 1.7e-10 69.3 46 71.7
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.2e-10 68.9 50 68.0
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 2.2e-10 68.9 81 50.6
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 1.1e-09 66.6 46 67.4
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 1.4e-09 66.2 47 68.1
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.4e-09 66.2 47 66.0
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.4e-09 66.2 47 66.0
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.4e-09 66.2 45 68.9
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 1.8e-09 65.9 46 69.6
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.8e-09 65.9 46 69.6
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.8e-09 65.9 46 69.6
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 2.4e-09 65.5 47 63.8
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 2.4e-09 65.5 47 63.8
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.4e-09 65.5 47 66.0
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 2.4e-09 65.5 72 50.0
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 3.1e-09 65.1 81 49.4
Aa31LG1G7540 Aethionema arabicum HOM05D006911 ORTHO05D006663 4.1e-09 64.7 60 58.3
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 4.1e-09 64.7 80 45.0
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 4.1e-09 64.7 47 61.7
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 4.1e-09 64.7 45 68.9
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 2.0e-08 62.4 47 66.0
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 2.7e-08 62.0 85 45.9
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 2.7e-08 62.0 79 53.2
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 4.5e-08 61.2 89 42.7
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 7.8e-08 60.5 89 42.7
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.3e-07 59.7 89 38.2
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 2.3e-07 58.9 61 57.4
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.3e-07 58.9 89 42.7
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.3e-07 58.9 89 38.2
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 2.3e-07 58.9 46 63.0
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 2.9e-07 58.5 61 57.4
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.9e-07 58.2 89 38.2
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.9e-07 58.2 87 41.4
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 3.9e-07 58.2 87 41.4
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 5.0e-07 57.8 46 56.5
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 5.0e-07 57.8 88 42.0
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 5.0e-07 57.8 81 44.4
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 6.6e-07 57.4 35 71.4
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 6.6e-07 57.4 45 57.8
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 6.6e-07 57.4 50 48.0
Cc09_g08880 Coffea canephora HOM05D006911 ORTHO05D006663 8.6e-07 57.0 45 60.0
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 8.6e-07 57.0 52 51.9
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 8.6e-07 57.0 47 57.4
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 8.6e-07 57.0 89 38.2
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 8.6e-07 57.0 46 65.2
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 1.1e-06 56.6 86 44.2
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.1e-06 56.6 87 40.2
Lsat_1_v5_gn_1_96620 Lactuca sativa HOM05D006911 ORTHO05D006663 1.1e-06 56.6 60 46.7
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 1.1e-06 56.6 88 42.0
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 1.5e-06 56.2 50 52.0
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 1.5e-06 56.2 54 53.7
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 1.5e-06 56.2 49 53.1
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 1.5e-06 56.2 38 71.1
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.9e-06 55.8 58 46.6
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.9e-06 55.8 58 46.6
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 1.9e-06 55.8 48 62.5
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.5e-06 55.5 85 41.2
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.5e-06 55.5 85 41.2
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.5e-06 55.5 65 49.2
Lsat_1_v5_gn_7_7541 Lactuca sativa HOM05D006911 ORTHO05D006663 3.3e-06 55.1 45 60.0
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 5.6e-06 54.3 79 38.0
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 7.3e-06 53.9 52 50.0
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 7.3e-06 53.9 85 41.2
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 7.3e-06 53.9 47 53.2
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 9.5e-06 53.5 46 50.0
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 9.5e-06 53.5 73 45.2


User provided reference genes

Program Settings