Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1721.8 915 100.0
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1657.1 915 96.3
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1652.5 922 95.8
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1652.1 921 96.0
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1645.2 921 95.4
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1608.6 915 93.3
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1585.1 917 92.1
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1567.7 917 91.5
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1549.3 915 90.3
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 0.0e+00 1522.7 915 89.2
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1519.2 915 88.9
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1518.1 913 87.6
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1498.0 944 86.0
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1451.4 916 85.6
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1440.2 934 83.9
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1379.8 916 80.0
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1185.2 915 66.9
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1171.8 919 68.3
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1170.6 915 68.7
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1166.8 914 66.8
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1166.4 915 68.5
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1156.0 912 65.2
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1154.8 914 65.2
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1154.0 923 64.7
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1151.7 915 67.4
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1151.0 990 62.0
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1147.1 918 66.8
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1144.8 957 64.3
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1143.6 916 66.6
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1143.6 915 67.0
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1143.6 916 66.4
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1140.6 916 66.6
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1139.0 915 66.8
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1137.1 923 66.3
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1131.7 918 64.5
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1130.9 918 64.8
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1130.5 910 65.5
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1130.2 918 66.0
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1121.7 915 64.8
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1120.9 910 67.0
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1118.2 918 63.6
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1115.9 922 64.5
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1108.2 928 63.3
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1108.2 906 63.8
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1105.5 915 63.6
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1103.2 921 61.7
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1101.3 909 63.7
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1097.0 929 62.8
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1092.8 917 62.3
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1087.8 849 66.0
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1086.2 938 63.6
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1085.1 929 62.4
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1078.9 926 62.0
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1078.5 919 60.9
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1077.8 907 62.8
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1077.8 924 62.0
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 6.3e-312 1074.7 914 62.4
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 7.5e-311 1070.5 908 60.5
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.9e-307 1058.5 919 59.3
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 6.4e-307 1057.4 1072 55.8
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 7.8e-305 1050.4 872 63.1
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 1.6e-302 1042.7 958 57.3
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 8.9e-301 1036.9 908 60.5
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 2.0e-300 1035.8 912 60.2
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 7.8e-297 1023.8 1082 53.4
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 7.3e-295 1017.3 859 61.4
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 2.8e-294 1015.4 919 59.2
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 6.2e-294 1014.2 908 58.8
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 8.1e-294 1013.8 867 60.2
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 2.0e-292 1009.2 903 59.7
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 9.3e-290 1000.3 983 57.2
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 2.0e-284 982.6 916 56.8
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 3.4e-284 981.9 589 91.7
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 3.9e-280 968.4 914 56.2
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 5.6e-279 964.5 920 58.0
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 5.3e-277 958.0 765 65.5
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.9e-274 949.5 905 57.0
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 2.5e-271 939.1 921 56.9
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.2e-268 930.2 871 56.5
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 2.5e-266 922.5 759 62.6
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.1e-265 919.5 916 54.0
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 6.1e-265 917.9 859 56.6
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 1.6e-262 909.8 1004 51.3
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 3.1e-261 905.6 918 54.5
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 2.1e-257 892.9 921 54.1
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 6.7e-248 861.3 708 64.5
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 1.5e-247 860.1 937 50.2
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 1.6e-244 850.1 725 64.6
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 5.9e-244 848.2 635 73.5
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 1.0e-243 847.4 1137 44.0
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 4.4e-239 832.0 930 51.0
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 8.8e-232 807.7 913 49.8
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.5e-231 807.0 726 57.9
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 5.7e-231 805.1 776 55.7
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 7.0e-229 798.1 441 98.4
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 8.0e-225 784.6 641 62.2
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 2.6e-215 753.1 599 64.1
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 9.6e-186 654.8 530 64.3
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 9.9e-183 644.8 571 58.1
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 4.6e-164 582.8 426 70.2
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 3.1e-160 570.1 485 61.0
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.0e-155 555.1 509 60.5
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 3.0e-155 553.5 908 38.8
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 4.6e-148 529.6 911 41.5
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 4.4e-138 496.5 465 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 7.2e-133 479.2 910 35.3
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 3.3e-130 470.3 895 36.1
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 2.6e-127 460.7 412 58.3
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 5.2e-123 446.4 605 43.8
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 2.7e-116 424.1 904 33.5
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 2.2e-113 414.5 296 74.7
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.6e-108 398.3 635 39.8
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 4.6e-95 353.6 669 37.7
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 1.9e-93 348.2 349 52.1
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 2.7e-87 327.8 568 38.7
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 3.1e-83 314.3 238 72.7
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 9.5e-77 292.7 228 65.8
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.2e-76 292.4 277 55.6
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 6.0e-71 273.5 284 56.0
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 4.8e-68 263.8 213 75.1
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 3.4e-66 257.7 598 35.5
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 5.4e-56 223.8 151 68.9
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 9.6e-53 213.0 118 94.9
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 8.4e-41 173.3 148 61.5
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.1e-40 172.9 121 70.2
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 9.3e-40 169.9 261 41.4
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.3e-33 149.4 98 77.6
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 2.2e-28 132.1 227 37.0
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 4.8e-28 131.0 194 36.6
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 1.4e-22 112.8 143 47.6
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 7.4e-21 107.1 120 49.2
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 5.3e-19 100.9 157 36.9
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 7.0e-19 100.5 105 49.5
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.1e-16 93.2 131 38.9
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.9e-16 92.4 75 57.3
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 5.5e-16 90.9 82 63.4
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 7.2e-16 90.5 100 55.0
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 2.3e-14 85.5 58 62.1
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 1.7e-12 79.3 180 30.6
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 5.9e-10 70.9 130 39.2
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 7.7e-10 70.5 130 40.0
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 8.5e-09 67.0 64 48.4
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 2.5e-08 65.5 65 52.3
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 5.5e-08 64.3 66 57.6
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.6e-07 62.8 113 32.7
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 4.7e-07 61.2 1001 20.4
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 4.7e-07 61.2 105 42.9


User provided reference genes

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