Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06768 Brassica carinata HOM05D010829 ORTHO05D001770 1.6e-75 286.2 161 100.0
BcaC05g24659 Brassica carinata HOM05D010829 ORTHO05D001770 4.4e-62 241.5 163 85.3
C05p05040 Brassica napus HOM05D010829 ORTHO05D001770 4.4e-62 241.5 163 85.3
BolC5t29276H Brassica oleracea HOM05D010829 ORTHO05D001770 4.4e-62 241.5 163 85.3
A10p05470 Brassica napus HOM05D010829 ORTHO05D001770 2.9e-61 238.8 163 85.3
BraA10t42810Z Brassica rapa HOM05D010829 ORTHO05D001770 2.9e-61 238.8 163 85.3
Thhalv10008904m.g Eutrema salsugineum HOM05D010829 ORTHO05D001770 4.6e-43 178.3 181 64.6
AL1G16960 Arabidopsis lyrata HOM05D010829 ORTHO05D001770 5.6e-41 171.4 176 68.8
AT1G06930 Arabidopsis thaliana HOM05D010829 ORTHO05D001770 3.4e-38 162.2 172 65.1
BraA09t42006Z Brassica rapa HOM05D010829 ORTHO05D001770 3.4e-38 162.2 166 63.3
Sp1g05650 Schrenkiella parvula HOM05D010829 ORTHO05D001770 2.9e-37 159.1 177 66.7
A09p66660 Brassica napus HOM05D010829 ORTHO05D001770 1.4e-36 156.8 166 63.9
BcaC07g42035 Brassica carinata HOM05D010829 ORTHO05D001770 7.1e-36 154.5 160 56.9
C08p50890 Brassica napus HOM05D010829 ORTHO05D001770 1.6e-32 143.3 152 63.8
BolC8t52617H Brassica oleracea HOM05D010829 ORTHO05D001770 1.6e-32 143.3 152 63.8
CARHR006610 Cardamine hirsuta HOM05D010829 ORTHO05D001770 7.6e-30 134.4 170 63.5
Aa31LG1G7990 Aethionema arabicum HOM05D010829 ORTHO05D001770 1.1e-28 130.6 165 54.5
Carub.0001s0623 Capsella rubella HOM05D010829 ORTHO05D001770 3.2e-28 129.0 186 53.2
THA.LOC104800781 Tarenaya hassleriana HOM05D010829 ORTHO05D001770 6.3e-24 114.8 179 49.2
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 3.7e-08 62.4 89 47.2
MELO3C020502.2 Cucumis melo HOM05D002277 ORTHO05D001770 8.2e-08 61.2 175 36.6
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 1.4e-07 60.5 68 51.5
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 2.4e-07 59.7 57 54.4
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 2.4e-07 59.7 65 50.8
Cfa011806 Carpinus fangiana HOM05D002277 ORTHO05D001770 3.1e-07 59.3 53 52.8
ECA248G3276 Erigeron canadensis HOM05D002277 ORTHO05D001770 3.1e-07 59.3 89 42.7
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.1e-07 59.3 66 56.1
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 4.1e-07 58.9 68 50.0
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 4.1e-07 58.9 65 56.9
Cpa.g.sc2.326 Carica papaya HOM05D002277 ORTHO05D001770 7.0e-07 58.2 103 39.8
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 9.1e-07 57.8 65 52.3
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 9.1e-07 57.8 65 52.3
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 9.1e-07 57.8 87 48.3
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.2e-06 57.4 65 53.8
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 1.2e-06 57.4 89 44.9
Eucgr.J00136 Eucalyptus grandis HOM05D002277 ORTHO05D001770 1.2e-06 57.4 57 56.1
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 1.2e-06 57.4 134 35.8
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.6e-06 57.0 60 51.7
CsaV3_6G002200 Cucumis sativus L. HOM05D002277 ORTHO05D001770 1.6e-06 57.0 52 55.8
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 2.0e-06 56.6 142 40.8
CiPaw.13G065900 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.0e-06 56.6 181 32.6
COL.COLO4_11188 Corchorus olitorius HOM05D002277 ORTHO05D001770 2.0e-06 56.6 64 46.9
CsaV3_1G036680 Cucumis sativus L. HOM05D002277 ORTHO05D001770 2.0e-06 56.6 174 39.7
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.0e-06 56.6 60 50.0
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 2.0e-06 56.6 60 50.0
Haze_24445 Corylus avellana HOM05D002277 ORTHO05D001770 2.6e-06 56.2 66 47.0
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 2.6e-06 56.2 65 47.7
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 2.6e-06 56.2 88 39.8
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 3.5e-06 55.8 68 45.6
Potri.013G156100 Populus trichocarpa HOM05D002277 ORTHO05D001770 3.5e-06 55.8 87 40.2
HPP92_011988 Vanilla planifolia HOM05D002277 ORTHO05D001770 3.5e-06 55.8 58 46.6
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 4.5e-06 55.5 67 47.8
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 4.5e-06 55.5 60 50.0
Sabra13G0126000 Salix brachista HOM05D002277 ORTHO05D001770 4.5e-06 55.5 69 47.8
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 4.5e-06 55.5 65 55.4
CiPaw.14G052400 Carya illinoinensis HOM05D002277 ORTHO05D001770 5.9e-06 55.1 199 32.7
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 5.9e-06 55.1 66 56.1
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 5.9e-06 55.1 66 56.1
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 5.9e-06 55.1 60 53.3
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 5.9e-06 55.1 65 49.2
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.7e-06 54.7 65 46.2
Gohir.D03G144700 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.7e-06 54.7 82 39.0
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 7.7e-06 54.7 59 54.2
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 7.7e-06 54.7 83 42.2
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 7.7e-06 54.7 65 55.4


User provided reference genes

Program Settings