Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06752 Brassica carinata HOM05D000083 ORTHO05D000196 3.8e-108 394.8 193 100.0
C05p05230 Brassica napus HOM05D000083 ORTHO05D000196 8.5e-68 260.8 193 71.5
BolC5t29294H Brassica oleracea HOM05D000083 ORTHO05D000196 1.0e-65 253.8 196 69.9
BraA10t42832Z Brassica rapa HOM05D000083 ORTHO05D000196 3.8e-60 235.3 146 79.5
A10p05700 Brassica napus HOM05D000083 ORTHO05D000196 4.2e-59 231.9 191 65.4
Thhalv10007482m.g Eutrema salsugineum HOM05D000083 ORTHO05D000196 2.8e-47 192.6 218 54.1
Carub.0001s0644 Capsella rubella HOM05D000083 ORTHO05D000196 8.5e-44 181.0 164 58.5
CARHR006860 Cardamine hirsuta HOM05D000083 ORTHO05D000196 5.5e-43 178.3 200 55.5
AT1G07150 Arabidopsis thaliana HOM05D000083 ORTHO05D000196 6.8e-41 171.4 185 54.6
A10p05680 Brassica napus HOM05D000083 ORTHO05D000196 4.1e-38 162.2 112 70.5
BraA10t42830Z Brassica rapa HOM05D000083 ORTHO05D000196 4.1e-38 162.2 112 70.5
AL1G17270 Arabidopsis lyrata HOM05D002258 ORTHO05D002539 5.9e-37 158.3 191 54.5
Sp1g05920 Schrenkiella parvula HOM05D000083 ORTHO05D000196 3.7e-31 139.0 166 53.0
THA.LOC104800747 Tarenaya hassleriana HOM05D000083 ORTHO05D000196 1.5e-24 117.1 112 60.7
AL4G24810 Arabidopsis lyrata HOM05D000083 ORTHO05D000196 2.2e-23 113.2 145 46.2
THA.LOC104816081 Tarenaya hassleriana HOM05D000083 ORTHO05D000196 2.2e-23 113.2 156 46.8
BcaC01g06035 Brassica carinata HOM05D000083 ORTHO05D000196 1.4e-22 110.5 151 44.4
BolC3t14349H Brassica oleracea HOM05D000083 ORTHO05D000196 1.4e-22 110.5 151 44.4
C03p19710 Brassica napus HOM05D002410 ORTHO05D002805 3.2e-22 109.4 139 46.8
Carub.0004s1114 Capsella rubella HOM05D000083 ORTHO05D000196 7.0e-22 108.2 127 50.4
AT2G30040 Arabidopsis thaliana HOM05D000083 ORTHO05D000196 1.2e-21 107.5 137 48.9
BraA03t10962Z Brassica rapa HOM05D000083 ORTHO05D000196 1.2e-21 107.5 151 44.4
A03p16750 Brassica napus HOM05D002410 ORTHO05D002805 3.5e-21 105.9 150 44.0
Thhalv10016604m.g Eutrema salsugineum HOM05D000083 ORTHO05D000196 6.0e-21 105.1 144 44.4
BcaB01g04135 Brassica carinata HOM05D000083 ORTHO05D000196 3.9e-20 102.4 123 49.6
BolC4t27407H Brassica oleracea HOM05D002410 ORTHO05D000196 6.6e-20 101.7 99 59.6
CARHR123340 Cardamine hirsuta HOM05D000083 ORTHO05D000196 6.6e-20 101.7 102 53.9
Aa31LG5G6660 Aethionema arabicum HOM05D000083 ORTHO05D000196 1.2e-18 97.4 112 51.8
BcaC02g12933 Brassica carinata HOM05D000083 ORTHO05D000196 1.2e-18 97.4 151 44.4
A04p22740 Brassica napus HOM05D002410 ORTHO05D002805 1.6e-18 97.1 100 57.0
THA.LOC104826284 Tarenaya hassleriana HOM05D000083 ORTHO05D000196 2.8e-18 96.3 85 56.5
A05p15400 Brassica napus HOM05D002410 ORTHO05D002805 3.6e-18 95.9 101 57.4
BraA05t20458Z Brassica rapa HOM05D000083 ORTHO05D000196 3.6e-18 95.9 101 57.4
C04p58920 Brassica napus HOM05D002410 ORTHO05D002805 8.1e-18 94.7 96 59.4
BcaB02g10289 Brassica carinata HOM05D000083 ORTHO05D000196 1.1e-17 94.4 130 48.5
C04p58900 Brassica napus HOM05D000083 ORTHO05D000196 1.4e-17 94.0 173 39.9
BcaC02g12932 Brassica carinata HOM05D000083 ORTHO05D000196 2.3e-17 93.2 177 38.4
Gohir.A13G233100 Gossypium hirsutum HOM05D000083 ORTHO05D000196 2.3e-17 93.2 107 51.4
Cpa.g.sc2.432 Carica papaya HOM05D000083 ORTHO05D000196 3.1e-17 92.8 104 51.9
C04p20690 Brassica napus HOM05D002410 ORTHO05D002805 4.0e-17 92.4 101 55.4
BolC4t23597H Brassica oleracea HOM05D000083 ORTHO05D000196 4.0e-17 92.4 101 55.4
Thecc.09G351400 Theobroma cacao HOM05D000083 ORTHO05D000196 4.0e-17 92.4 138 47.8
MD11G1070200 Malus domestica HOM05D000083 ORTHO05D000196 6.8e-17 91.7 106 48.1
BraA04t17815Z Brassica rapa HOM05D002410 ORTHO05D002805 8.9e-17 91.3 99 54.5
Lalb_Chr04g0252161 Lupinus albus HOM05D000083 ORTHO05D000196 8.9e-17 91.3 101 49.5
MD03G1065400 Malus domestica HOM05D000083 ORTHO05D000196 8.9e-17 91.3 104 48.1
Sp4g12600 Schrenkiella parvula HOM05D000083 ORTHO05D000196 8.9e-17 91.3 122 47.5
BcaC02g11081 Brassica carinata HOM05D000083 ORTHO05D000196 1.2e-16 90.9 129 47.3
CANSAT54G0825 Cannabis sativa HOM05D000083 ORTHO05D000196 1.5e-16 90.5 115 44.3
CiPaw.13G074900 Carya illinoinensis HOM05D000083 ORTHO05D000196 2.6e-16 89.7 125 46.4
Gorai.013G269600 Gossypium raimondii HOM05D000083 ORTHO05D000196 2.6e-16 89.7 126 43.7
Prupe.6G054400 Prunus persica HOM05D000083 ORTHO05D000196 2.6e-16 89.7 114 46.5
QL01p039006 Quercus lobata HOM05D000083 ORTHO05D000196 3.4e-16 89.4 88 53.4
Gohir.D13G238700 Gossypium hirsutum HOM05D000083 ORTHO05D000196 5.8e-16 88.6 126 42.9
AUR62001619 Chenopodium quinoa HOM05D000083 ORTHO05D000196 2.2e-15 86.7 114 45.6
Gohir.A03G028800 Gossypium hirsutum HOM05D000083 ORTHO05D000196 2.2e-15 86.7 105 47.6
Atru.chr3.4174 Acer truncatum HOM05D000083 ORTHO05D000196 4.9e-15 85.5 120 47.5
Atru.chr3.4182 Acer truncatum HOM05D000083 ORTHO05D000196 4.9e-15 85.5 120 47.5
RcHm_v2.0_Chr5g0070321 Rosa chinensis HOM05D000083 ORTHO05D000196 4.9e-15 85.5 95 47.4
Sabra16G0172500 Salix brachista HOM05D000083 ORTHO05D000196 4.9e-15 85.5 98 51.0
Potri.001G278600 Populus trichocarpa HOM05D000083 ORTHO05D000196 6.4e-15 85.1 128 45.3
Sc12g0000570 Simmondsia chinensis HOM05D000083 ORTHO05D000196 6.4e-15 85.1 86 50.0
Gohir.A08G201200 Gossypium hirsutum HOM05D000083 ORTHO05D000196 1.1e-14 84.3 106 48.1
Gohir.D03G139800 Gossypium hirsutum HOM05D000083 ORTHO05D000196 1.1e-14 84.3 105 46.7
Lalb_Chr10g0103451 Lupinus albus HOM05D000083 ORTHO05D000196 1.4e-14 84.0 119 42.9
Gohir.D08G218400 Gossypium hirsutum HOM05D000083 ORTHO05D000196 1.9e-14 83.6 105 48.6
Gorai.004G232400 Gossypium raimondii HOM05D000083 ORTHO05D000196 1.9e-14 83.6 105 48.6
Ciclev10028185m.g Citrus clementina HOM05D000083 ORTHO05D000196 3.2e-14 82.8 98 48.0
PGR102G1841 Punica granatum HOM05D000083 ORTHO05D000196 3.2e-14 82.8 90 50.0
Dinv28662 Davidia involucrata HOM05D000083 ORTHO05D000196 4.1e-14 82.4 90 52.2
Gorai.003G146500 Gossypium raimondii HOM05D000083 ORTHO05D000196 4.1e-14 82.4 105 47.6
Sabra09G0055400 Salix brachista HOM05D001399 ORTHO05D001670 4.1e-14 82.4 117 47.0
Potri.009G073200 Populus trichocarpa HOM05D000083 ORTHO05D000196 5.4e-14 82.0 111 47.7
TWI31G0987 Tripterygium wilfordii HOM05D000083 ORTHO05D000196 5.4e-14 82.0 109 44.0
Haze_24357 Corylus avellana HOM05D000083 ORTHO05D000196 9.2e-14 81.3 94 48.9
Duzib168G2361 Durio zibethinus HOM05D000083 ORTHO05D000196 9.2e-14 81.3 104 48.1
Sc21g0006490 Simmondsia chinensis HOM05D000083 ORTHO05D000196 9.2e-14 81.3 85 47.1
C09p50640 Brassica napus HOM05D000083 ORTHO05D000196 1.2e-13 80.9 85 54.1
CSS0006369 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D000196 1.2e-13 80.9 99 46.5
CSS0006974 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D000196 1.2e-13 80.9 99 46.5
Actinidia34463 Actinidia chinensis HOM05D000083 ORTHO05D000196 1.6e-13 80.5 119 45.4
FAN16G3433 Fragaria x ananassa HOM05D001399 ORTHO05D001670 1.6e-13 80.5 93 47.3
CSS0002745 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D000196 2.1e-13 80.1 135 42.2
Sed0023052 Sechium edule HOM05D000083 ORTHO05D000196 2.1e-13 80.1 112 42.0
vmacro14608 Vaccinium macrocarpon HOM05D002258 ORTHO05D000196 2.1e-13 80.1 109 45.9
ClCG03G000610 Citrullus lanatus HOM05D000083 ORTHO05D000196 2.7e-13 79.7 93 50.5
Ca_05621_v3 Cicer arietinum L. HOM05D000083 ORTHO05D000196 3.5e-13 79.3 100 50.0
Cc01_g14440 Coffea canephora HOM05D000083 ORTHO05D000196 3.5e-13 79.3 109 45.9
FvH4_3g39010 Fragaria vesca HOM05D000083 ORTHO05D000196 3.5e-13 79.3 110 42.7
BraA10t43667Z Brassica rapa HOM05D000083 ORTHO05D000196 4.6e-13 79.0 85 52.9
FAN11G0459 Fragaria x ananassa HOM05D001399 ORTHO05D001670 4.6e-13 79.0 103 42.7
A10p15670 Brassica napus HOM05D000083 ORTHO05D000196 7.8e-13 78.2 85 51.8
BolC9t57917H Brassica oleracea HOM05D000083 ORTHO05D000196 7.8e-13 78.2 84 50.0
Eucgr.B02237 Eucalyptus grandis HOM05D000083 ORTHO05D000196 1.0e-12 77.8 118 43.2
Hma1.2p1_1981F.1_g309890 Hydrangea macrophylla HOM05D000083 ORTHO05D000196 1.3e-12 77.4 135 40.7
FAN21G1219 Fragaria x ananassa HOM05D001399 ORTHO05D001670 1.7e-12 77.0 103 41.7
Gohir.D05G107500 Gossypium hirsutum HOM05D000083 ORTHO05D000196 1.7e-12 77.0 105 42.9
Actinidia23223 Actinidia chinensis HOM05D000083 ORTHO05D000196 2.3e-12 76.6 117 43.6
MELO3C020535.2 Cucumis melo HOM05D000083 ORTHO05D000196 3.9e-12 75.9 96 44.8
FAN25G2957 Fragaria x ananassa HOM05D000083 ORTHO05D000196 3.9e-12 75.9 110 41.8
Gorai.009G111600 Gossypium raimondii HOM05D000083 ORTHO05D000196 3.9e-12 75.9 105 41.9
Duzib170G0618 Durio zibethinus HOM05D000083 ORTHO05D000196 6.6e-12 75.1 110 41.8
Phvul.008G259700 Phaseolus vulgaris HOM05D000083 ORTHO05D000196 8.6e-12 74.7 112 42.0
EL10Ac7g16199 Beta vulgaris HOM05D000083 ORTHO05D000196 1.1e-11 74.3 116 39.7
Duzib150G1400 Durio zibethinus HOM05D000083 ORTHO05D000196 1.1e-11 74.3 106 47.2
THA.LOC104814916 Tarenaya hassleriana HOM05D000083 ORTHO05D000196 1.1e-11 74.3 99 46.5
Ah.08g222890 Amaranthus hybridus HOM05D000083 ORTHO05D000196 1.5e-11 73.9 134 36.6
BcaB08g36195 Brassica carinata HOM05D000083 ORTHO05D000196 1.9e-11 73.6 85 49.4
LjContig00141g0004320 Lotus japonicus HOM05D000083 ORTHO05D000196 2.5e-11 73.2 89 47.2
Aqoxy4G02492 Aquilegia oxysepala HOM05D000083 ORTHO05D000196 3.3e-11 72.8 123 38.2
Glyma.02G228300 Glycine max HOM05D000083 ORTHO05D000196 3.3e-11 72.8 94 44.7
Lj2P1085T14 Lonicera japonica HOM05D000083 ORTHO05D000196 4.3e-11 72.4 98 44.9
PSO384G4918 Papaver somniferum HOM05D000083 ORTHO05D000196 4.3e-11 72.4 89 44.9
TWI75G1408 Tripterygium wilfordii HOM05D000083 ORTHO05D000196 4.3e-11 72.4 109 44.0
Nn2g13172 Nelumbo nucifera HOM05D000083 ORTHO05D000196 5.6e-11 72.0 102 44.1
PSO339G4984 Papaver somniferum HOM05D000083 ORTHO05D000196 5.6e-11 72.0 89 44.9
VMungo0647G0441 Vigna mungo HOM05D000083 ORTHO05D000196 7.3e-11 71.6 112 41.1
CsaV3_1G036340 Cucumis sativus L. HOM05D000083 ORTHO05D000196 9.5e-11 71.2 100 45.0
Lsat_1_v5_gn_9_18960 Lactuca sativa HOM05D000083 ORTHO05D000196 9.5e-11 71.2 108 41.7
Psat2g056200 Pisum sativum HOM05D000083 ORTHO05D000196 9.5e-11 71.2 156 33.3
TAR633G1991 Trochodendron aralioides HOM05D001399 ORTHO05D001670 1.2e-10 70.9 109 42.2
Glyma.18G060900 Glycine max HOM05D000083 ORTHO05D000196 2.1e-10 70.1 103 43.7
Sed0027354 Sechium edule HOM05D000083 ORTHO05D000196 2.8e-10 69.7 116 38.8
GSVIVG01024709001 Vitis vinifera HOM05D000083 ORTHO05D000196 2.8e-10 69.7 87 43.7
Lsat_1_v5_gn_5_172860 Lactuca sativa HOM05D000083 ORTHO05D000196 3.6e-10 69.3 115 38.3
VMungo0540G0217 Vigna mungo HOM05D001399 ORTHO05D001670 3.6e-10 69.3 88 47.7
Ah.15g099380 Amaranthus hybridus HOM05D000083 ORTHO05D000196 6.2e-10 68.6 102 41.2
TAR636G0748 Trochodendron aralioides HOM05D000083 ORTHO05D000196 6.2e-10 68.6 87 46.0
ECA247G2526 Erigeron canadensis HOM05D000083 ORTHO05D000196 1.1e-09 67.8 126 36.5
Glyma.14G195300 Glycine max HOM05D000083 ORTHO05D000196 1.1e-09 67.8 105 41.0
Nn2g10899 Nelumbo nucifera HOM05D000083 ORTHO05D000196 1.8e-09 67.0 91 44.0
Rhsim01G0238200 Rhododendron simsii HOM05D010733 ORTHO05D015737 3.1e-09 66.2 97 46.4
ECA248G3538 Erigeron canadensis HOM05D000083 ORTHO05D000196 4.0e-09 65.9 143 37.8
Rhsim13G0067800 Rhododendron simsii HOM05D000083 ORTHO05D000196 6.8e-09 65.1 92 40.2
Migut.D00866 Erythranthe guttata HOM05D000083 ORTHO05D000196 1.2e-08 64.3 102 42.2
HanXRQChr01g0011741 Helianthus annuus HOM05D000083 ORTHO05D000196 1.2e-08 64.3 121 38.0
DCAR_007362 Daucus carota HOM05D000083 ORTHO05D000196 3.4e-08 62.8 142 32.4
CDE04G3726 Ceratophyllum demersum HOM05D000083 ORTHO05D043849 7.6e-08 61.6 143 35.7
Nn6g33743 Nelumbo nucifera HOM05D000083 ORTHO05D000196 7.6e-08 61.6 79 45.6
HanXRQChr08g0229121 Helianthus annuus HOM05D000083 ORTHO05D000196 9.9e-08 61.2 118 35.6
Medtr5g071560 Medicago truncatula HOM05D000083 ORTHO05D000196 1.3e-07 60.8 102 36.3
Cpa.g.sc87.101 Carica papaya HOM05D000083 ORTHO05D000196 2.2e-07 60.1 102 37.3
HanXRQChr17g0555321 Helianthus annuus HOM05D000083 ORTHO05D000196 2.2e-07 60.1 126 33.3
Phvul.006G069600 Phaseolus vulgaris HOM05D000083 ORTHO05D000196 2.9e-07 59.7 87 42.5
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 3.7e-07 59.3 101 37.6
COL.COLO4_11100 Corchorus olitorius HOM05D000083 ORTHO05D000196 3.7e-07 59.3 89 46.1
HPP92_012031 Vanilla planifolia HOM05D000083 ORTHO05D000196 6.4e-07 58.5 89 36.0
CDE08G0575 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 1.1e-06 57.8 103 36.9
Manes.13G068022 Manihot esculenta HOM05D000083 ORTHO05D000196 5.4e-06 55.5 116 33.6
TPR.G5075 Trifolium pratense HOM05D000002 ORTHO05D000001 7.1e-06 55.1 136 34.6


User provided reference genes

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