Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06739 Brassica carinata HOM05D010249 ORTHO05D012412 9.6e-71 270.0 132 100.0
BraA10t42862Z Brassica rapa HOM05D010249 ORTHO05D012412 2.7e-49 198.7 132 80.3
A10p06000 Brassica napus HOM05D010249 ORTHO05D012412 7.9e-49 197.2 132 78.8
BcaC05g24698 Brassica carinata HOM05D010249 ORTHO05D012412 3.0e-48 195.3 132 78.0
BolC5t29320H Brassica oleracea HOM05D010249 ORTHO05D012412 3.0e-48 195.3 132 78.0
C05p05480 Brassica napus HOM05D010249 ORTHO05D012412 8.7e-48 193.7 132 77.3
Sp1g06210 Schrenkiella parvula HOM05D010249 ORTHO05D012412 1.3e-43 179.9 128 73.4
CARHR007230 Cardamine hirsuta HOM05D010249 ORTHO05D012412 5.5e-42 174.5 132 71.2
AL1G17630 Arabidopsis lyrata HOM05D010249 ORTHO05D012412 2.2e-38 162.5 132 69.7
AT1G07473 Arabidopsis thaliana HOM05D010249 ORTHO05D012412 9.0e-37 157.1 132 67.4
Carub.0001s0678 Capsella rubella HOM05D010249 ORTHO05D012412 1.7e-35 152.9 132 64.4
AL1G17640 Arabidopsis lyrata HOM05D010249 ORTHO05D012412 2.9e-35 152.1 145 60.7
AT1G07476 Arabidopsis thaliana HOM05D010249 ORTHO05D012412 1.1e-31 140.2 146 58.9
Carub.0001s0679 Capsella rubella HOM05D010249 ORTHO05D012412 3.3e-31 138.7 145 57.2
Thhalv10009441m.g Eutrema salsugineum HOM05D010249 ORTHO05D012412 7.4e-31 137.5 110 65.5
BcaC05g24696 Brassica carinata HOM05D010249 ORTHO05D012412 7.4e-23 110.9 73 78.1
BraA08t35470Z Brassica rapa HOM05D010249 ORTHO05D012412 2.6e-20 102.4 93 62.4
Aa31LG1G6860 Aethionema arabicum HOM05D010249 ORTHO05D012412 3.2e-18 95.5 137 50.4
THA.LOC104826309 Tarenaya hassleriana HOM05D010249 ORTHO05D012412 7.2e-18 94.4 137 51.8
THA.LOC104801530 Tarenaya hassleriana HOM05D010249 ORTHO05D012412 1.7e-14 83.2 123 48.0
TWI31G0177 Tripterygium wilfordii HOM05D008943 ORTHO05D010477 3.6e-09 65.5 120 40.0
Ciclev10030147m.g Citrus clementina HOM05D008943 ORTHO05D010477 6.1e-09 64.7 117 42.7
Sabra09G0025900 Salix brachista HOM05D008943 ORTHO05D010477 5.7e-07 58.2 122 36.1
QL01p029253 Quercus lobata HOM05D008943 ORTHO05D010477 7.5e-07 57.8 123 38.2
Cc01_g13330 Coffea canephora HOM05D008943 ORTHO05D010477 1.7e-06 56.6 131 33.6
Lj3g0017475 Lotus japonicus HOM05D008943 ORTHO05D010477 1.7e-06 56.6 136 30.9
TWI79G1516 Tripterygium wilfordii HOM05D008943 ORTHO05D010477 1.7e-06 56.6 121 33.9
Duzib168G0546 Durio zibethinus HOM05D014101 ORTHO05D010477 2.8e-06 55.8 120 35.0
Medtr2g097730 Medicago truncatula HOM05D008943 ORTHO05D010477 2.8e-06 55.8 122 36.9
A08p35640 Brassica napus HOM05D010249 ORTHO05D012412 3.7e-06 55.5 53 64.2
CiPaw.14G065200 Carya illinoinensis HOM05D008943 ORTHO05D010477 8.2e-06 54.3 140 34.3


User provided reference genes

Program Settings