Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06730 Brassica carinata HOM05D000994 ORTHO05D000817 3.3e-37 157.9 83 100.0
A09p56770 Brassica napus HOM05D000994 ORTHO05D000817 2.4e-27 125.2 84 83.3
BraA09t41067Z Brassica rapa HOM05D000994 ORTHO05D000817 2.4e-27 125.2 84 83.3
BolC8t51542H Brassica oleracea HOM05D000994 ORTHO05D000817 3.5e-26 121.3 84 81.0
C08p39720 Brassica napus HOM05D000994 ORTHO05D000817 3.8e-25 117.9 84 79.8
Thhalv10000226m.g Eutrema salsugineum HOM05D000994 ORTHO05D000817 1.9e-24 115.5 84 75.0
Sp4g02730 Schrenkiella parvula HOM05D000994 ORTHO05D000817 1.9e-24 115.5 84 76.2
BcaC07g40974 Brassica carinata HOM05D000994 ORTHO05D000817 1.4e-22 109.4 75 82.7
CARHR184820 Cardamine hirsuta HOM05D000994 ORTHO05D000817 1.4e-22 109.4 83 73.5
Aa31LG7G13090 Aethionema arabicum HOM05D000994 ORTHO05D000817 1.8e-22 109.0 84 71.4
Carub.0004s0297 Capsella rubella HOM05D000994 ORTHO05D000817 3.0e-22 108.2 85 71.8
AL4G13810 Arabidopsis lyrata HOM05D000994 ORTHO05D000817 3.3e-21 104.8 85 69.4
AT2G23790 Arabidopsis thaliana HOM05D000994 ORTHO05D000817 2.8e-20 101.7 86 69.8
THA.LOC104807557 Tarenaya hassleriana HOM05D000994 ORTHO05D000817 1.1e-19 99.8 85 64.7
A04p18140 Brassica napus HOM05D000994 ORTHO05D000817 2.0e-18 95.5 84 67.9
BraA04t17432Z Brassica rapa HOM05D000994 ORTHO05D000817 2.0e-18 95.5 84 67.9
THA.LOC104819811 Tarenaya hassleriana HOM05D000994 ORTHO05D000817 2.0e-18 95.5 84 63.1
BcaB06g27936 Brassica carinata HOM05D000994 ORTHO05D000817 2.2e-17 92.0 84 67.9
BcaC02g08543 Brassica carinata HOM05D000994 ORTHO05D000817 5.5e-16 87.4 84 65.5
C04p53150 Brassica napus HOM05D000994 ORTHO05D000817 5.5e-16 87.4 84 65.5
BolC4t26872H Brassica oleracea HOM05D000994 ORTHO05D000817 5.5e-16 87.4 84 65.5
Sp7g34480 Schrenkiella parvula HOM05D000994 ORTHO05D000817 1.8e-14 82.4 85 58.8
Thhalv10025544m.g Eutrema salsugineum HOM05D000994 ORTHO05D000817 1.2e-13 79.7 85 57.6
Aa31LG6G13630 Aethionema arabicum HOM05D000994 ORTHO05D000817 1.5e-13 79.3 85 56.5
BcaNung03936 Brassica carinata HOM05D000994 ORTHO05D000817 1.3e-12 76.3 86 53.5
BcaNung03941 Brassica carinata HOM05D000994 ORTHO05D000817 1.3e-12 76.3 86 53.5
AL7G14170 Arabidopsis lyrata HOM05D000994 ORTHO05D000817 3.7e-12 74.7 83 56.6
BcaNung04281 Brassica carinata HOM05D000994 ORTHO05D000817 3.7e-12 74.7 85 54.1
C07p61980 Brassica napus HOM05D000994 ORTHO05D000817 3.7e-12 74.7 85 54.1
BolC7t46618H Brassica oleracea HOM05D000994 ORTHO05D000817 3.7e-12 74.7 85 54.1
BcaNung03527 Brassica carinata HOM05D000994 ORTHO05D000817 2.4e-11 72.0 81 53.1
A01p02080 Brassica napus HOM05D000994 ORTHO05D000817 3.1e-11 71.6 81 53.1
BraA01t00197Z Brassica rapa HOM05D000994 ORTHO05D000817 3.1e-11 71.6 81 53.1
C01p02260 Brassica napus HOM05D000994 ORTHO05D000817 5.4e-11 70.9 81 53.1
BolC1t00218H Brassica oleracea HOM05D000994 ORTHO05D000817 5.4e-11 70.9 81 53.1
Carub.0007s0350 Capsella rubella HOM05D000994 ORTHO05D000817 5.4e-11 70.9 75 54.7
A03p64640 Brassica napus HOM05D000994 ORTHO05D000817 7.0e-11 70.5 85 51.8
BraA03t15528Z Brassica rapa HOM05D000994 ORTHO05D000817 7.0e-11 70.5 85 51.8
AL7G14180 Arabidopsis lyrata HOM05D000994 ORTHO05D000817 1.6e-10 69.3 50 72.0
AT4G36820 Arabidopsis thaliana HOM05D000994 ORTHO05D000817 2.0e-10 68.9 75 57.3
QL06p044927 Quercus lobata HOM05D000994 ORTHO05D000817 1.5e-08 62.8 73 45.2
CARHR245180 Cardamine hirsuta HOM05D000994 ORTHO05D000817 2.5e-08 62.0 75 53.3
CiPaw.01G032200 Carya illinoinensis HOM05D000994 ORTHO05D000817 7.2e-08 60.5 72 45.8
Psat4g091040 Pisum sativum HOM05D000994 ORTHO05D000817 7.2e-08 60.5 85 49.4
RcHm_v2.0_Chr2g0102751 Rosa chinensis HOM05D000994 ORTHO05D000817 1.6e-07 59.3 75 48.0
Lj4g0027249 Lotus japonicus HOM05D000994 ORTHO05D000817 2.1e-07 58.9 84 45.2
Manes.12G098800 Manihot esculenta HOM05D000994 ORTHO05D000817 2.7e-07 58.5 77 44.2
Duzib264G0759 Durio zibethinus HOM05D000994 ORTHO05D000817 6.1e-07 57.4 91 41.8
Manes.13G135900 Manihot esculenta HOM05D000994 ORTHO05D000817 6.1e-07 57.4 77 44.2
Atru.chr3.507 Acer truncatum HOM05D000994 ORTHO05D000817 8.0e-07 57.0 86 44.2
Thecc.01G042100 Theobroma cacao HOM05D000994 ORTHO05D000817 1.0e-06 56.6 93 39.8
MELO3C020941.2 Cucumis melo HOM05D000994 ORTHO05D000817 1.4e-06 56.2 77 41.6
MD15G1269400 Malus domestica HOM05D000994 ORTHO05D000817 1.4e-06 56.2 79 44.3
TPR.G20286 Trifolium pratense HOM05D000994 ORTHO05D000817 2.3e-06 55.5 76 51.3
COL.COLO4_04841 Corchorus olitorius HOM05D000994 ORTHO05D000817 4.0e-06 54.7 95 37.9
Prupe.7G148300 Prunus persica HOM05D000994 ORTHO05D000817 4.0e-06 54.7 79 44.3
ClCG02G013260 Citrullus lanatus HOM05D000994 ORTHO05D000817 6.8e-06 53.9 76 40.8
MD02G1155000 Malus domestica HOM05D000994 ORTHO05D000817 6.8e-06 53.9 79 41.8


User provided reference genes

Program Settings