Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06723 Brassica carinata HOM05D001685 ORTHO05D032604 3.7e-51 204.5 100 100.0
C05p05610 Brassica napus HOM05D001685 ORTHO05D032604 1.4e-21 106.3 71 71.8
Thhalv10007444m.g Eutrema salsugineum HOM05D001685 ORTHO05D006653 9.9e-20 100.1 59 83.1
CARHR007400 Cardamine hirsuta HOM05D001685 ORTHO05D006653 2.2e-19 99.0 59 81.4
Sp1g06330 Schrenkiella parvula HOM05D001685 ORTHO05D006653 2.2e-19 99.0 59 83.1
A08p35550 Brassica napus HOM05D001685 ORTHO05D006653 4.9e-19 97.8 59 81.4
C08p03210 Brassica napus HOM05D001685 ORTHO05D006653 4.9e-19 97.8 59 81.4
BolC8t47119H Brassica oleracea HOM05D001685 ORTHO05D006653 4.9e-19 97.8 59 81.4
BraA08t35461Z Brassica rapa HOM05D001685 ORTHO05D006653 4.9e-19 97.8 59 81.4
BcaB03g13384 Brassica carinata HOM05D001685 ORTHO05D006653 8.4e-19 97.1 59 81.4
Carub.0001s0694 Capsella rubella HOM05D001685 ORTHO05D006653 1.1e-18 96.7 59 79.7
AL1G17800 Arabidopsis lyrata HOM05D001685 ORTHO05D006653 1.9e-18 95.9 59 79.7
AT1G07615 Arabidopsis thaliana HOM05D001685 ORTHO05D006653 1.6e-17 92.8 59 76.3
BcaC07g42487 Brassica carinata HOM05D001685 ORTHO05D006653 2.7e-17 92.0 59 78.0
BcaC07g41983 Brassica carinata HOM05D001685 ORTHO05D006653 6.0e-17 90.9 59 78.0
C08p50430 Brassica napus HOM05D001685 ORTHO05D006653 6.0e-17 90.9 59 78.0
BolC8t52571H Brassica oleracea HOM05D001685 ORTHO05D006653 6.0e-17 90.9 59 78.0
THA.LOC104826328 Tarenaya hassleriana HOM05D001685 ORTHO05D006653 1.0e-16 90.1 59 72.9
BolC5t29332H Brassica oleracea HOM05D001685 ORTHO05D032604 1.8e-16 89.4 69 66.7
Aa31sc36G30 Aethionema arabicum HOM05D001685 ORTHO05D006653 6.7e-16 87.4 59 71.2
A09p66260 Brassica napus HOM05D001685 ORTHO05D006653 1.1e-15 86.7 59 74.6
BraA09t41964Z Brassica rapa HOM05D001685 ORTHO05D006653 1.1e-15 86.7 59 74.6
PSO384G4450 Papaver somniferum HOM05D001685 ORTHO05D006653 6.2e-14 80.9 60 63.3
Atru.chr3.3899 Acer truncatum HOM05D001685 ORTHO05D006653 2.4e-13 79.0 59 61.0
Cfa011498 Carpinus fangiana HOM05D002515 ORTHO05D006653 2.4e-13 79.0 59 61.0
Haze_24093 Corylus avellana HOM05D001685 ORTHO05D006653 2.4e-13 79.0 59 61.0
Dinv12423 Davidia involucrata HOM05D001685 ORTHO05D006653 3.1e-13 78.6 59 61.0
Rhsim13G0082800 Rhododendron simsii HOM05D001685 ORTHO05D006653 3.1e-13 78.6 59 62.7
Duzib150G0753 Durio zibethinus HOM05D001685 ORTHO05D006653 6.9e-13 77.4 59 61.0
TAR381G0153 Trochodendron aralioides HOM05D001685 ORTHO05D006653 6.9e-13 77.4 59 61.0
Manes.01G174266 Manihot esculenta HOM05D001685 ORTHO05D006653 9.0e-13 77.0 59 62.7
Manes.01G174600 Manihot esculenta HOM05D001685 ORTHO05D006653 9.0e-13 77.0 59 62.7
Manes.07G091200 Manihot esculenta HOM05D001685 ORTHO05D006653 9.0e-13 77.0 59 62.7
Phvul.002G003900 Phaseolus vulgaris HOM05D001685 ORTHO05D006653 9.0e-13 77.0 59 61.0
Dinv16999 Davidia involucrata HOM05D001685 ORTHO05D006653 1.2e-12 76.6 59 61.0
Dinv42948 Davidia involucrata HOM05D001685 ORTHO05D006653 1.2e-12 76.6 59 61.0
Dinv43152 Davidia involucrata HOM05D001685 ORTHO05D006653 1.2e-12 76.6 59 61.0
Prupe.6G078100 Prunus persica HOM05D001685 ORTHO05D006653 1.5e-12 76.3 59 64.4
Manes.07G090600 Manihot esculenta HOM05D001685 ORTHO05D006653 2.0e-12 75.9 59 61.0
QL01p032067 Quercus lobata HOM05D001685 ORTHO05D006653 2.0e-12 75.9 59 61.0
Thecc.09G300600 Theobroma cacao HOM05D001685 ORTHO05D006653 2.0e-12 75.9 59 62.7
TAR636G3542 Trochodendron aralioides HOM05D001685 ORTHO05D006653 2.0e-12 75.9 59 61.0
vmacro03073 Vaccinium macrocarpon HOM05D001685 ORTHO05D006653 2.0e-12 75.9 59 61.0
CiPaw.13G094700 Carya illinoinensis HOM05D001685 ORTHO05D006653 2.6e-12 75.5 59 57.6
ClCG05G026700 Citrullus lanatus HOM05D001685 ORTHO05D006653 2.6e-12 75.5 59 62.7
COL.COLO4_19167 Corchorus olitorius HOM05D001685 ORTHO05D006653 2.6e-12 75.5 59 59.3
Lj1A153T35 Lonicera japonica HOM05D001685 ORTHO05D006653 2.6e-12 75.5 59 59.3
PGR083G0190 Punica granatum HOM05D001685 ORTHO05D006653 2.6e-12 75.5 59 62.7
Cpa.g.sc81.154 Carica papaya HOM05D001685 ORTHO05D006653 3.4e-12 75.1 59 59.3
Actinidia07035 Actinidia chinensis HOM05D001685 ORTHO05D006653 4.5e-12 74.7 66 59.1
Actinidia37203 Actinidia chinensis HOM05D001685 ORTHO05D006653 4.5e-12 74.7 59 62.7
ATR0618G259 Amborella trichopoda HOM05D001685 ORTHO05D006653 5.8e-12 74.3 59 62.7
CSS0035660 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D006653 5.8e-12 74.3 59 61.0
Gohir.D13G229400 Gossypium hirsutum HOM05D001685 ORTHO05D006653 5.8e-12 74.3 59 57.6
Gorai.013G260100 Gossypium raimondii HOM05D001685 ORTHO05D006653 5.8e-12 74.3 59 57.6
HanXRQChr05g0134921 Helianthus annuus HOM05D001685 ORTHO05D006653 5.8e-12 74.3 58 62.1
Lalb_Chr19g0128141 Lupinus albus HOM05D001685 ORTHO05D006653 5.8e-12 74.3 64 53.1
Aa31LG4G9820 Aethionema arabicum HOM05D001685 ORTHO05D006653 7.6e-12 73.9 53 66.0
MD03G1094400 Malus domestica HOM05D001685 ORTHO05D006653 7.6e-12 73.9 59 61.0
MD11G1109500 Malus domestica HOM05D001685 ORTHO05D006653 7.6e-12 73.9 59 64.4
Sed0007817 Sechium edule HOM05D001685 ORTHO05D006653 7.6e-12 73.9 59 57.6
TWI79G0438 Tripterygium wilfordii HOM05D001685 ORTHO05D006653 7.6e-12 73.9 66 53.0
Hund18911 Selenicereus undatus HOM05D001685 ORTHO05D006653 1.0e-11 73.6 59 61.0
MELO3C012459.2 Cucumis melo HOM05D001685 ORTHO05D006653 1.3e-11 73.2 59 61.0
CsaV3_5G036630 Cucumis sativus L. HOM05D001685 ORTHO05D006653 1.3e-11 73.2 59 61.0
FvH4_3g36011 Fragaria vesca HOM05D001685 ORTHO05D006653 1.3e-11 73.2 59 61.0
FAN21G0377 Fragaria x ananassa HOM05D002515 ORTHO05D006653 1.3e-11 73.2 59 61.0
RcHm_v2.0_Chr2g0137651 Rosa chinensis HOM05D001685 ORTHO05D006653 1.3e-11 73.2 59 61.0
Aqoxy5G01203 Aquilegia oxysepala HOM05D001685 ORTHO05D006653 1.7e-11 72.8 59 59.3
arahy.Tifrunner.gnm1.ann1.ZC6F0H Arachis hypogaea HOM05D001685 ORTHO05D006653 1.7e-11 72.8 59 55.9
EL10As8g23878 Beta vulgaris HOM05D001685 ORTHO05D006653 1.7e-11 72.8 59 61.0
Lsat_1_v5_gn_8_73061 Lactuca sativa HOM05D001685 ORTHO05D006653 1.7e-11 72.8 58 62.1
Nn2g10368 Nelumbo nucifera HOM05D001685 ORTHO05D006653 1.7e-11 72.8 59 57.6
RcHm_v2.0_Chr5g0064441 Rosa chinensis HOM05D001685 ORTHO05D006653 1.7e-11 72.8 59 61.0
arahy.Tifrunner.gnm1.ann1.B8I18B Arachis hypogaea HOM05D001685 ORTHO05D006653 2.2e-11 72.4 59 54.2
arahy.Tifrunner.gnm1.ann1.KF4YKV Arachis hypogaea HOM05D001685 ORTHO05D006653 2.2e-11 72.4 59 55.9
MSTRG.19725 Avicennia marina HOM05D001685 ORTHO05D006653 2.2e-11 72.4 58 58.6
Eucgr.B02369 Eucalyptus grandis HOM05D001685 ORTHO05D006653 2.2e-11 72.4 59 59.3
AUR62001788 Chenopodium quinoa HOM05D001685 ORTHO05D006653 2.9e-11 72.0 59 59.3
AUR62009576 Chenopodium quinoa HOM05D001685 ORTHO05D006653 2.9e-11 72.0 59 59.3
ECA236G2424 Erigeron canadensis HOM05D001685 ORTHO05D006653 2.9e-11 72.0 58 58.6
Aqoxy4G02919 Aquilegia oxysepala HOM05D001685 ORTHO05D006653 3.8e-11 71.6 59 59.3
Os11g0704300 Oryza sativa ssp. japonica HOM05D001685 ORTHO05D006653 3.8e-11 71.6 59 61.0
GSVIVG01024971001 Vitis vinifera HOM05D001685 ORTHO05D006653 3.8e-11 71.6 59 55.9
Ca_09792_v3 Cicer arietinum L. HOM05D001685 ORTHO05D006653 4.9e-11 71.2 59 55.9
Lj3g0002633 Lotus japonicus HOM05D001685 ORTHO05D006653 4.9e-11 71.2 59 55.9
Medtr1g073010 Medicago truncatula HOM05D001685 ORTHO05D006653 4.9e-11 71.2 58 58.6
DCAR_005335 Daucus carota HOM05D001685 ORTHO05D006653 6.5e-11 70.9 59 57.6
Gohir.A13G224400 Gossypium hirsutum HOM05D001685 ORTHO05D006653 6.5e-11 70.9 59 55.9
Sabra16G0144500 Salix brachista HOM05D001685 ORTHO05D006653 8.4e-11 70.5 59 54.2
Cc10_g08830 Coffea canephora HOM05D001685 ORTHO05D006653 1.1e-10 70.1 60 53.3
Glyma.01G148100 Glycine max HOM05D001685 ORTHO05D006653 1.1e-10 70.1 59 54.2
Nitab4.5_0000317g0040 Nicotiana tabacum HOM05D001685 ORTHO05D006653 1.1e-10 70.1 59 55.9
Psat6g138600 Pisum sativum HOM05D001685 ORTHO05D006653 1.1e-10 70.1 59 54.2
VMungo1383G3233 Vigna mungo HOM05D001685 ORTHO05D006653 1.1e-10 70.1 59 54.2
Migut.J01517 Erythranthe guttata HOM05D001685 ORTHO05D006653 1.4e-10 69.7 58 60.3
Oeu052796.1 Olea europaea HOM05D001685 ORTHO05D006653 1.4e-10 69.7 58 56.9
Glyma.01G202301 Glycine max HOM05D001685 ORTHO05D006653 1.9e-10 69.3 59 54.2
Migut.J01524 Erythranthe guttata HOM05D001685 ORTHO05D006653 3.2e-10 68.6 58 58.6
Potri.001G239600 Populus trichocarpa HOM05D001685 ORTHO05D006653 3.2e-10 68.6 59 52.5
SalBow6G3863 Salvia bowleyana HOM05D001685 ORTHO05D006653 3.2e-10 68.6 59 52.5
TPR.G18576 Trifolium pratense HOM05D001685 ORTHO05D006653 3.2e-10 68.6 59 54.2
Solyc04g058140.3 Solanum lycopersicum HOM05D001685 ORTHO05D006653 4.2e-10 68.2 59 52.5
Sopen04g026040 Solanum pennellii HOM05D001685 ORTHO05D006653 4.2e-10 68.2 59 52.5
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 4.2e-10 68.2 59 52.5
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 5.5e-10 67.8 59 54.2
DCAR_004329 Daucus carota HOM05D001685 ORTHO05D006653 7.1e-10 67.4 59 54.2
SGA_v2.0_scaffold66G22403 Striga asiatica HOM05D001685 ORTHO05D006653 9.3e-10 67.0 59 55.9
Sc21g0005770 Simmondsia chinensis HOM05D001685 ORTHO05D006653 1.2e-09 66.6 59 55.9
CAN.G311.3 Capsicum annuum HOM05D001685 ORTHO05D000105 1.6e-09 66.2 59 50.8
Peaxi162Scf00066g00069 Petunia axillaris HOM05D001685 ORTHO05D006653 1.6e-09 66.2 63 49.2
Zm00001eb417820 Zea mays HOM05D001685 ORTHO05D006653 3.5e-09 65.1 59 54.2
Zm00001eb164640 Zea mays HOM05D001685 ORTHO05D006653 6.0e-09 64.3 59 52.5
CAN.G1325.3 Capsicum annuum HOM05D001685 ORTHO05D006653 2.3e-08 62.4 53 52.8
SHI05944 Sapria himalayana HOM05D001685 ORTHO05D006653 3.0e-08 62.0 59 49.2
CDE02G0543 Ceratophyllum demersum HOM05D001685 ORTHO05D002946 3.9e-08 61.6 59 54.2
CDE09G0753 Ceratophyllum demersum HOM05D001685 ORTHO05D006653 1.1e-07 60.1 59 52.5
Mapoly0058s0072 Marchantia polymorpha HOM05D001685 ORTHO05D006653 1.1e-07 60.1 59 52.5
Peaxi162Scf00946g00021 Petunia axillaris HOM05D001685 ORTHO05D006653 1.1e-07 60.1 63 42.9
AagrBONN_evm.TU.Sc2ySwM_368.2871 Anthoceros agrestis HOM05D001685 ORTHO05D006653 1.9e-07 59.3 58 55.2
SEGI_38445 Sequoiadendron giganteum HOM05D001685 ORTHO05D006653 4.3e-07 58.2 59 52.5
HPP92_014383 Vanilla planifolia HOM05D001685 ORTHO05D006653 5.7e-07 57.8 64 53.1
CBR_g39640 Chara braunii HOM05D001685 ORTHO05D006653 2.8e-06 55.5 58 50.0
unitig_37.g12764 Utricularia gibba HOM05D001685 ORTHO05D006653 2.8e-06 55.5 59 49.2


User provided reference genes

Program Settings