Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 0.0e+00 1368.2 707 100.0
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 0.0e+00 1190.3 668 93.1
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 0.0e+00 1188.3 668 92.8
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 0.0e+00 1187.9 668 92.5
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 0.0e+00 1184.9 668 92.7
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 0.0e+00 1122.8 674 88.3
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 0.0e+00 1109.0 672 87.1
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 0.0e+00 1103.6 653 89.3
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 0.0e+00 1101.3 673 86.6
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 0.0e+00 1099.7 675 86.4
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 0.0e+00 1083.2 673 86.3
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 5.3e-285 984.2 672 77.1
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 4.0e-272 941.4 674 74.6
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 3.1e-240 835.5 578 76.1
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.7e-219 766.5 661 62.2
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 5.1e-219 765.0 669 61.3
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 8.7e-219 764.2 658 61.6
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 5.2e-216 755.0 665 60.6
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 9.0e-216 754.2 667 61.5
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 1.9e-213 746.5 657 60.4
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 4.2e-213 745.3 666 60.4
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 5.4e-213 745.0 664 60.7
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 3.0e-211 739.2 662 59.1
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 3.9e-211 738.8 662 59.2
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 8.7e-211 737.6 701 57.5
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.5e-210 736.1 662 58.9
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 4.3e-210 735.3 657 59.5
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 1.6e-209 733.4 655 59.5
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 8.1e-209 731.1 655 60.3
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 1.1e-208 730.7 680 59.4
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.4e-208 730.3 666 59.3
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 6.9e-208 728.0 661 59.0
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 3.4e-207 725.7 662 58.2
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 7.6e-207 724.5 662 58.9
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 6.4e-206 721.5 576 64.9
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 1.1e-205 720.7 680 58.7
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 1.1e-205 720.7 658 60.8
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.9e-205 719.9 660 58.2
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 3.5e-204 715.7 667 57.3
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 4.6e-204 715.3 665 58.9
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 5.6e-202 708.4 656 58.7
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 2.8e-201 706.1 672 58.6
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 8.1e-201 704.5 662 57.4
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 1.4e-200 703.7 664 56.8
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 4.0e-200 702.2 664 56.9
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 7.6e-199 698.0 669 57.4
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 2.2e-198 696.4 688 54.9
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 3.8e-198 695.7 664 57.2
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 8.4e-198 694.5 697 53.9
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 8.4e-198 694.5 673 56.6
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 3.2e-197 692.6 661 58.4
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 2.1e-196 689.9 655 55.6
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 1.0e-195 687.6 659 57.2
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 3.9e-195 685.6 660 56.5
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 1.1e-194 684.1 659 56.1
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 4.3e-194 682.2 662 56.0
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 1.3e-193 680.6 663 56.3
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 4.8e-193 678.7 657 57.1
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 4.8e-193 678.7 665 56.2
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 6.2e-193 678.3 661 56.3
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 1.8e-192 676.8 657 56.3
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 2.4e-192 676.4 657 55.9
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 1.5e-191 673.7 659 54.2
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 3.4e-191 672.5 652 57.2
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 1.0e-190 671.0 692 55.6
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 2.9e-190 669.5 661 54.6
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 2.9e-190 669.5 658 56.8
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 2.5e-189 666.4 688 54.9
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 5.5e-189 665.2 710 51.7
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.6e-188 663.7 672 53.9
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 1.3e-187 660.6 671 56.3
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 3.0e-187 659.4 653 54.4
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.5e-186 657.1 642 55.5
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 6.3e-185 651.7 652 54.9
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.4e-184 650.6 669 52.8
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 3.4e-183 646.0 470 68.7
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.9e-179 632.5 669 51.1
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 1.9e-178 630.2 643 54.7
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 2.2e-177 626.7 658 53.3
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 1.1e-173 614.4 659 51.7
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 1.9e-173 613.6 570 57.9
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.2e-172 610.9 662 51.8
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 3.9e-171 605.9 586 57.3
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 1.4e-168 597.4 618 53.1
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.9e-165 587.0 652 52.5
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 7.2e-165 585.1 663 51.1
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 1.1e-162 577.8 630 51.0
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 2.0e-162 577.0 588 54.9
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 2.6e-162 576.6 590 54.7
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 5.7e-162 575.5 698 47.6
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 3.7e-161 572.8 649 50.8
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 1.6e-156 557.4 657 48.4
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 2.4e-152 543.5 654 49.1
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 2.8e-132 476.9 340 69.1
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 1.4e-131 474.6 585 47.9
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 2.4e-128 463.8 610 45.9
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 4.4e-122 443.0 680 42.4
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 2.4e-120 437.2 472 48.9
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 8.9e-115 418.7 698 40.0
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.1e-107 393.7 286 64.7
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 4.2e-96 356.7 265 65.3
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 6.5e-65 253.1 224 57.6
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 6.3e-44 183.3 299 44.8
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.1e-31 141.7 117 61.5
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.8e-30 138.7 89 70.8
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 9.8e-29 132.9 87 70.1
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.8e-28 131.3 85 69.4
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 4.5e-26 124.0 448 28.3
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.4e-21 107.5 69 66.7
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 3.7e-20 104.4 69 66.7
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 4.4e-13 80.9 243 25.9
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 7.5e-13 80.1 149 37.6
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.7e-10 71.6 68 50.0
BcaC07g41967 Brassica carinata HOM05D003203 ORTHO05D003526 1.9e-08 65.5 58 69.0
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.8e-06 58.9 51 51.0


User provided reference genes

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