Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 2.8e-288 994.6 495 100.0
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 7.6e-262 906.7 486 93.4
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 6.4e-261 903.7 490 92.4
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 6.4e-261 903.7 484 93.4
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 5.4e-260 900.6 484 93.2
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 6.8e-255 883.6 513 87.7
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 4.5e-238 827.8 499 83.8
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 8.1e-232 807.0 497 83.7
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 3.6e-219 765.0 501 78.0
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.6e-216 756.1 500 79.0
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 9.1e-215 750.4 508 77.4
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 3.1e-199 698.7 513 71.2
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 4.8e-192 674.9 461 74.0
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.0e-190 669.5 453 77.9
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 8.3e-184 647.5 509 66.8
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 4.1e-183 645.2 501 68.9
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 8.0e-179 630.9 492 67.7
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 2.3e-178 629.4 343 92.4
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.1e-175 620.5 508 64.6
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 3.3e-172 609.0 509 65.2
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 5.6e-172 608.2 501 64.5
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 5.2e-170 601.7 508 63.4
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 1.0e-165 587.4 461 65.1
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 1.4e-151 540.4 538 54.1
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 4.6e-150 535.4 531 54.8
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 1.7e-149 533.5 539 53.1
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 5.1e-149 531.9 541 54.7
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 2.5e-148 529.6 536 53.4
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 1.2e-147 527.3 541 52.5
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 1.6e-147 526.9 532 54.7
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 2.1e-147 526.6 484 58.9
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 3.6e-147 525.8 534 53.9
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 4.7e-147 525.4 532 54.5
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 6.2e-147 525.0 524 54.4
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 8.1e-147 524.6 530 52.6
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 2.4e-146 523.1 521 53.7
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 2.4e-146 523.1 500 55.8
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 3.4e-145 519.2 542 51.8
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 9.9e-145 517.7 526 54.2
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 1.7e-144 516.9 540 52.8
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 3.8e-144 515.8 510 53.5
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 8.4e-144 514.6 531 52.5
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 8.4e-144 514.6 536 54.1
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 1.9e-143 513.5 527 52.6
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 9.2e-143 511.1 533 52.2
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 3.5e-142 509.2 532 51.9
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 4.6e-142 508.8 519 54.1
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 7.8e-142 508.1 530 53.8
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 1.3e-141 507.3 516 53.3
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 3.9e-141 505.8 540 51.7
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.1e-140 504.2 530 51.1
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 1.5e-140 503.8 527 53.9
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 3.3e-140 502.7 524 53.6
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 1.2e-139 500.7 538 52.6
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 1.1e-138 497.7 483 56.1
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 6.9e-138 495.0 525 52.0
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 1.2e-137 494.2 545 49.7
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 2.6e-137 493.0 521 51.1
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 3.4e-137 492.7 535 49.9
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 5.8e-137 491.9 528 51.5
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 9.9e-137 491.1 540 50.0
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 8.4e-136 488.0 519 52.8
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 2.4e-135 486.5 537 49.5
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 7.1e-135 485.0 536 50.6
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 3.9e-133 479.2 542 48.3
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 5.6e-132 475.3 505 52.3
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 1.6e-131 473.8 510 51.4
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 1.8e-130 470.3 506 52.0
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 2.4e-130 469.9 529 47.8
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 3.1e-130 469.5 529 47.6
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 6.9e-130 468.4 524 49.2
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 9.0e-130 468.0 529 48.0
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 4.9e-128 462.2 542 50.0
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.4e-127 460.7 541 47.9
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 2.4e-127 459.9 527 49.5
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 2.1e-126 456.8 528 47.5
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 3.5e-126 456.1 549 47.5
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 8.7e-125 451.4 528 47.2
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 9.6e-124 448.0 546 46.3
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 4.8e-123 445.7 526 47.7
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 6.9e-122 441.8 495 46.9
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 9.0e-122 441.4 529 46.5
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.2e-121 441.0 512 48.8
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 2.6e-121 439.9 530 47.9
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 2.6e-121 439.9 514 48.2
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 6.4e-120 435.3 533 46.5
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 1.4e-119 434.1 505 47.3
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 4.2e-119 432.6 495 47.5
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 3.5e-118 429.5 538 45.2
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 3.0e-117 426.4 513 46.0
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.4e-114 417.5 504 45.8
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 3.1e-114 416.4 533 45.4
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 3.1e-114 416.4 536 47.4
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 2.5e-111 406.8 529 45.7
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 3.9e-109 399.4 539 45.5
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 7.4e-108 395.2 542 40.8
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 6.7e-101 372.1 536 41.4
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 1.0e-96 358.2 518 41.1
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 1.8e-93 347.4 273 62.6
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.1e-92 344.7 483 42.4
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 1.3e-91 341.3 255 63.5
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 3.8e-88 329.7 591 35.2
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 3.8e-88 329.7 553 35.6
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 1.9e-87 327.4 587 34.4
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 7.4e-84 315.5 374 45.7
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.3e-83 314.7 466 38.6
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.7e-83 314.3 602 33.2
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 1.4e-82 311.2 259 56.0
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 2.6e-81 307.0 570 34.6
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 5.7e-76 289.3 200 67.0
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 3.1e-66 256.9 451 37.3
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 7.7e-65 252.3 261 47.1
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 8.0e-62 242.3 331 46.2
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 3.5e-57 226.9 347 42.7
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 1.3e-56 224.9 346 42.5
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.1e-50 205.3 310 41.6
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.6e-46 191.4 149 59.1
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.7e-43 181.4 211 50.2
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 2.9e-43 180.6 119 66.4
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 3.9e-40 170.2 356 34.0
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 5.2e-29 133.3 113 61.9
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.1e-21 109.0 96 57.3
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 2.6e-20 104.4 97 60.8
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 3.3e-15 87.4 131 41.2
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.6e-14 85.1 161 39.8
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 3.6e-14 84.0 106 44.3
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 3.4e-12 77.4 85 52.9
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 7.6e-12 76.3 103 42.7
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.3e-11 75.5 95 43.2
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 5.4e-10 70.1 197 29.9
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 1.1e-07 62.4 74 43.2


User provided reference genes

Program Settings