Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 3.2e-66 255.0 132 100.0
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 8.7e-40 167.2 93 96.8
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 3.3e-39 165.2 93 95.7
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 1.4e-37 159.8 93 93.5
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 1.4e-37 159.8 93 93.5
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 1.8e-37 159.5 94 88.3
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 4.1e-37 158.3 108 82.4
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 1.2e-36 156.8 94 86.2
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 2.0e-36 156.0 94 88.3
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 2.6e-36 155.6 95 88.4
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 3.4e-36 155.2 95 87.4
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 3.4e-36 155.2 95 87.4
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 5.9e-36 154.5 95 87.4
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 5.9e-36 154.5 94 86.2
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 7.6e-36 154.1 94 85.1
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 1.3e-35 153.3 94 86.2
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 2.5e-34 149.1 95 84.2
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 5.5e-34 147.9 95 82.1
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 1.0e-32 143.7 95 81.1
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 1.7e-27 126.3 82 86.6
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 5.5e-26 121.3 104 65.4
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 5.7e-23 111.3 94 58.5
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 5.7e-23 111.3 95 58.9
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 1.3e-22 110.2 94 57.4
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 1.3e-22 110.2 95 60.0
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 1.7e-22 109.8 94 57.4
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 2.2e-22 109.4 90 58.9
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 2.8e-22 109.0 95 61.1
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 4.8e-22 108.2 94 57.4
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 4.8e-22 108.2 95 57.9
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 1.8e-21 106.3 95 60.0
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 9.1e-21 104.0 95 58.9
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 1.5e-20 103.2 95 54.7
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 4.5e-20 101.7 95 55.8
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 7.7e-20 100.9 95 55.8
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 1.3e-19 100.1 88 61.4
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 1.7e-19 99.8 95 54.7
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 1.7e-19 99.8 94 57.4
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 2.2e-19 99.4 94 57.4
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 2.2e-19 99.4 95 56.8
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 5.0e-19 98.2 95 54.7
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 5.0e-19 98.2 95 55.8
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 6.5e-19 97.8 95 53.7
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 1.1e-18 97.1 95 53.7
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 1.1e-18 97.1 95 53.7
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 5.5e-18 94.7 81 60.5
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 7.2e-18 94.4 96 49.0
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 7.2e-18 94.4 95 52.6
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 7.2e-18 94.4 95 50.5
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 9.4e-18 94.0 96 55.2
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 1.6e-17 93.2 95 52.6
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 4.7e-17 91.7 90 54.4
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 6.1e-17 91.3 95 52.6
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 6.1e-17 91.3 95 52.6
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 6.1e-17 91.3 95 52.6
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 6.1e-17 91.3 95 52.6
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 8.0e-17 90.9 95 47.4
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 8.0e-17 90.9 114 46.5
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 2.3e-16 89.4 94 47.9
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 2.3e-16 89.4 95 50.5
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 2.3e-16 89.4 95 50.5
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 3.0e-16 89.0 95 51.6
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 3.9e-16 88.6 95 49.5
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 1.5e-15 86.7 88 53.4
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 2.0e-15 86.3 90 53.3
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 2.6e-15 85.9 92 47.8
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 4.4e-15 85.1 96 49.0
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 7.4e-15 84.3 94 40.4
Atru.chr2.3597 Acer truncatum HOM05D007364 ORTHO05D009275 4.8e-14 81.6 55 67.3
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 4.8e-14 81.6 88 46.6
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 2.4e-13 79.3 110 41.8
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 2.4e-13 79.3 110 41.8
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 7.0e-13 77.8 95 42.1
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 1.2e-12 77.0 97 46.4
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.6e-12 76.6 95 43.2
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 1.6e-12 76.6 97 45.4
CsaV3_4G028750 Cucumis sativus L. HOM05D007364 ORTHO05D009275 2.6e-12 75.9 70 57.1
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 4.5e-12 75.1 98 44.9
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 5.9e-12 74.7 98 43.9
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 5.9e-12 74.7 98 43.9
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 5.9e-12 74.7 98 43.9
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.3e-11 73.6 95 41.1
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 1.3e-11 73.6 101 41.6
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 1.7e-11 73.2 95 43.2
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 1.7e-11 73.2 95 43.2
CiPaw.01G094100 Carya illinoinensis HOM05D007364 ORTHO05D009275 8.5e-11 70.9 78 51.3
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 1.9e-10 69.7 92 44.6
Nitab4.5_0001925g0240 Nicotiana tabacum HOM05D007364 ORTHO05D009275 1.9e-10 69.7 90 44.4
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 4.7e-09 65.1 94 39.4
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 1.0e-08 63.9 87 46.0
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 1.0e-08 63.9 114 43.0
Lj9P543T41 Lonicera japonica HOM05D007364 ORTHO05D009275 1.0e-08 63.9 84 44.0
Mapoly0061s0135 Marchantia polymorpha HOM05D007364 ORTHO05D009275 6.7e-08 61.2 105 35.2
HPP92_017099 Vanilla planifolia HOM05D007364 ORTHO05D009275 1.2e-07 60.5 98 37.8
unitig_26.g10058 Utricularia gibba HOM05D007364 ORTHO05D009275 2.0e-07 59.7 89 38.2
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 2.0e-07 59.7 92 40.2
CiPaw.01G207600 Carya illinoinensis HOM05D007364 ORTHO05D009275 3.3e-07 58.9 57 59.6
ECA232G2752 Erigeron canadensis HOM05D007364 ORTHO05D009275 4.4e-07 58.5 75 41.3
HanXRQChr04g0125291 Helianthus annuus HOM05D007364 ORTHO05D009275 5.7e-07 58.2 87 37.9
LjContig00484g0025496 Lotus japonicus HOM05D007364 ORTHO05D009275 8.2e-06 54.3 64 50.0


User provided reference genes

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