Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 0.0e+00 1149.4 571 100.0
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 0.0e+00 1120.5 571 96.5
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 0.0e+00 1115.1 571 96.5
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 0.0e+00 1110.5 571 96.3
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 0.0e+00 1109.4 571 96.1
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 0.0e+00 1108.6 571 96.1
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 0.0e+00 1102.4 562 96.3
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 0.0e+00 1094.0 573 94.9
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 0.0e+00 1094.0 573 94.9
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 0.0e+00 1092.0 572 94.6
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 0.0e+00 1091.3 572 94.4
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 0.0e+00 1084.7 568 94.4
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 0.0e+00 1075.8 572 92.7
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 4.7e-311 1070.5 572 92.5
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.5e-309 1065.4 572 92.5
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 9.5e-309 1062.8 573 90.8
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 1.1e-304 1049.3 563 92.2
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 1.4e-304 1048.9 574 90.6
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 2.3e-294 1015.0 568 87.1
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 1.4e-283 979.2 559 87.1
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 7.6e-266 920.2 574 77.4
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 4.9e-265 917.5 574 77.2
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 6.0e-263 910.6 577 76.1
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 8.7e-262 906.7 568 76.4
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 2.5e-261 905.2 570 76.5
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 9.6e-261 903.3 569 75.6
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 9.6e-261 903.3 570 76.3
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 4.8e-260 901.0 603 73.6
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 6.2e-260 900.6 572 75.7
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.4e-259 899.4 568 75.2
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 2.4e-259 898.7 575 75.8
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 9.0e-259 896.7 570 76.1
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 1.5e-258 896.0 566 75.3
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 4.5e-258 894.4 576 75.9
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.0e-257 893.3 568 74.8
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 1.3e-257 892.9 569 75.2
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 2.2e-257 892.1 570 75.1
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 2.9e-257 891.7 575 75.0
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 6.5e-257 890.6 567 74.4
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 2.5e-256 888.6 573 74.3
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 2.5e-256 888.6 549 76.9
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 4.2e-256 887.9 567 74.3
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.2e-255 886.3 578 74.6
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 1.6e-255 885.9 567 74.1
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 2.1e-255 885.6 567 74.6
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 2.1e-255 885.6 568 74.1
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.0e-254 883.2 568 73.8
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 1.3e-254 882.9 549 77.0
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 1.1e-253 879.8 570 74.7
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 4.3e-253 877.9 572 74.0
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 5.7e-253 877.5 574 73.3
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 9.7e-253 876.7 567 74.4
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 9.7e-253 876.7 568 72.7
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 1.6e-252 875.9 570 73.9
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 2.2e-252 875.5 567 74.3
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 2.2e-252 875.5 570 74.9
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 3.7e-252 874.8 568 73.6
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 3.7e-252 874.8 572 73.6
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 1.8e-251 872.5 569 74.2
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 6.9e-251 870.5 553 74.0
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 2.0e-250 869.0 568 73.4
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 3.4e-250 868.2 568 73.1
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 3.4e-250 868.2 568 73.6
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 4.5e-250 867.8 573 73.3
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 4.5e-250 867.8 568 73.2
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 1.3e-249 866.3 570 73.3
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 1.7e-249 865.9 568 72.7
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 2.9e-249 865.1 569 72.9
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 1.1e-248 863.2 573 72.8
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 7.2e-248 860.5 568 72.5
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 9.4e-248 860.1 570 72.3
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 2.1e-247 859.0 569 72.6
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 1.0e-246 856.7 570 71.1
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 3.9e-246 854.7 514 77.8
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 2.5e-245 852.0 568 72.4
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 1.7e-244 849.4 567 71.1
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 1.7e-244 849.4 529 75.6
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 3.7e-244 848.2 621 68.9
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 4.5e-242 841.3 559 70.8
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 5.9e-242 840.9 531 75.5
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 2.9e-241 838.6 580 70.7
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 2.9e-241 838.6 580 70.9
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 6.5e-241 837.4 576 71.4
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 1.9e-240 835.9 571 70.2
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 6.7e-238 827.4 557 70.7
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 1.5e-237 826.2 514 74.7
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.3e-236 823.2 573 68.8
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 4.8e-236 821.2 530 74.2
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 8.2e-236 820.5 569 68.0
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 1.2e-234 816.6 553 69.1
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 8.5e-233 810.4 587 67.6
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 8.5e-233 810.4 596 64.9
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 2.3e-230 802.4 571 68.1
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 3.9e-230 801.6 528 70.3
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 9.7e-229 797.0 565 68.7
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 9.7e-229 797.0 567 66.8
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 6.5e-225 784.3 570 66.7
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 7.5e-221 770.8 481 75.7
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 3.1e-219 765.4 621 61.0
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 2.7e-218 762.3 498 73.1
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 1.6e-207 726.5 448 77.2
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 5.0e-201 704.9 569 62.2
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.4e-195 686.0 408 79.9
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 1.3e-193 680.2 437 73.9
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 5.2e-190 668.3 434 74.7
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 1.5e-189 666.8 439 71.8
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 9.2e-187 657.5 429 74.8
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 1.0e-177 627.5 544 57.4
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 4.3e-176 622.1 423 72.1
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 3.4e-173 612.5 435 71.0
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 8.1e-159 564.7 434 66.6
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 1.1e-152 544.3 555 50.6
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 6.2e-151 538.5 550 52.2
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 9.3e-147 524.6 370 71.1
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 4.6e-146 522.3 558 48.7
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 3.0e-121 439.9 381 59.3
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 1.1e-120 438.0 573 42.1
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-91 340.9 222 68.9
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 4.7e-90 336.3 276 63.8
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 9.8e-88 328.6 207 77.8
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 3.0e-84 317.0 581 38.0
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 1.7e-79 301.2 218 71.6
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 4.9e-79 299.7 223 61.9
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 3.0e-68 263.8 597 33.8
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 2.8e-66 257.3 586 31.9
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 2.6e-56 224.2 455 34.7
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 5.4e-54 216.5 148 73.6
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.7e-53 214.2 148 72.3
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.4e-49 201.8 136 74.3
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 3.8e-47 193.7 126 70.6
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 2.1e-42 177.9 95 75.8
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 1.5e-40 171.8 106 76.4
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 2.6e-40 171.0 191 53.9
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.5e-24 118.6 86 69.8
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 4.3e-19 100.5 74 60.8
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.6e-16 91.3 50 76.0
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.6e-16 91.3 63 61.9
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 2.6e-11 74.7 59 64.4
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 1.4e-09 68.9 43 67.4
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 6.9e-09 66.6 327 26.3
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 1.5e-08 65.5 327 26.0
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 1.4e-06 58.9 303 23.4
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 2.5e-06 58.2 337 26.7
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 3.2e-06 57.8 328 22.3
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 3.2e-06 57.8 328 22.3
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 4.2e-06 57.4 291 25.4
A04p13630 Brassica napus HOM05D031239 ORTHO05D027603 5.5e-06 57.0 61 50.8
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 9.4e-06 56.2 327 21.7
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 9.4e-06 56.2 327 21.7
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 9.4e-06 56.2 301 26.6
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 9.4e-06 56.2 328 21.6
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 9.4e-06 56.2 327 25.1


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