Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 5.5e-130 467.6 232 100.0
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.5e-114 416.4 232 85.8
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 1.4e-112 409.8 233 85.4
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 3.7e-110 401.7 234 84.2
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-109 400.2 234 83.8
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.2e-108 396.7 233 84.1
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.0e-108 396.0 229 83.0
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 7.7e-108 394.0 235 83.4
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.5e-106 389.8 232 82.3
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.5e-106 389.8 232 82.3
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 1.9e-106 389.4 233 80.7
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.5e-106 389.0 233 81.1
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 3.2e-106 388.7 232 81.5
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 7.2e-106 387.5 232 80.6
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.8e-104 382.9 217 82.9
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 8.8e-104 380.6 217 82.5
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 3.1e-101 372.1 233 79.0
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 5.9e-100 367.9 254 72.0
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 3.2e-98 362.1 233 76.4
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 5.5e-98 361.3 234 75.2
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 2.8e-97 359.0 232 75.4
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 3.6e-97 358.6 233 76.4
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-89 333.6 252 69.4
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 2.7e-84 315.8 214 71.5
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 5.9e-84 314.7 230 65.7
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 8.9e-80 300.8 231 62.8
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 3.7e-70 268.9 212 59.9
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.2e-68 263.8 209 57.4
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 6.0e-68 261.5 214 54.7
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 1.0e-67 260.8 213 55.9
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 2.3e-67 259.6 235 52.8
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.9e-67 258.8 239 51.0
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.5e-66 256.9 212 55.2
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 3.3e-66 255.8 229 55.5
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.3e-66 255.4 215 54.4
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 5.6e-66 255.0 210 58.1
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 7.3e-66 254.6 203 58.1
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 9.5e-66 254.2 227 55.5
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.1e-65 253.1 220 53.6
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 3.6e-65 252.3 229 51.5
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 3.6e-65 252.3 222 53.6
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.1e-64 250.8 220 55.0
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.4e-64 250.4 208 56.7
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 1.4e-64 250.4 216 57.9
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 2.4e-64 249.6 230 51.3
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 5.2e-64 248.4 210 54.3
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 5.2e-64 248.4 211 54.5
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 6.8e-64 248.1 219 55.3
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.5e-63 246.9 218 52.8
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 2.0e-63 246.5 209 53.1
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 2.6e-63 246.1 201 59.7
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 4.4e-63 245.4 218 57.3
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 4.4e-63 245.4 230 50.4
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 5.8e-63 245.0 220 54.5
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 5.8e-63 245.0 228 52.2
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 9.9e-63 244.2 207 56.0
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 9.9e-63 244.2 222 53.6
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.3e-62 243.8 200 56.5
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.7e-62 243.4 237 49.8
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 2.2e-62 243.0 209 54.1
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 2.9e-62 242.7 214 54.7
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 4.9e-62 241.9 205 53.2
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 8.4e-62 241.1 218 54.6
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 8.4e-62 241.1 226 50.4
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 8.4e-62 241.1 231 49.8
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 8.4e-62 241.1 212 54.7
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.4e-61 240.4 209 51.2
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.4e-61 240.4 216 53.2
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 7.1e-61 238.0 209 53.1
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 9.2e-61 237.7 218 51.4
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 9.2e-61 237.7 229 50.2
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.6e-60 236.9 195 54.4
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.1e-60 236.5 203 57.1
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.1e-60 236.5 230 50.9
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 4.6e-60 235.3 200 54.0
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 6.0e-60 235.0 223 47.5
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 6.0e-60 235.0 213 51.6
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 6.0e-60 235.0 217 51.2
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 8.7e-59 231.1 237 48.9
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.1e-58 230.7 194 54.1
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-58 230.7 209 47.8
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-58 230.7 209 47.8
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.5e-58 230.3 229 50.2
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 3.3e-58 229.2 209 47.8
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 4.3e-58 228.8 204 50.5
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 9.6e-58 227.6 213 51.2
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.1e-57 226.5 202 50.0
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 4.7e-57 225.3 209 46.4
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 6.2e-57 224.9 204 50.0
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 8.1e-57 224.6 174 56.9
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 2.4e-56 223.0 200 53.5
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 4.0e-56 222.2 202 51.5
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 5.2e-56 221.9 200 53.0
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 6.9e-56 221.5 232 47.4
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 2.0e-55 219.9 186 55.4
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 4.4e-55 218.8 210 50.5
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.3e-54 217.2 213 50.2
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 6.4e-54 214.9 212 52.4
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 8.4e-54 214.5 180 57.2
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 7.1e-53 211.5 188 53.7
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 3.9e-51 205.7 194 52.6
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 3.9e-51 205.7 210 46.2
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 6.6e-51 204.9 210 47.6
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 8.7e-51 204.5 187 48.1
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.9e-50 203.4 167 52.1
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.6e-49 200.3 210 45.7
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.1e-49 199.9 239 44.8
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 6.2e-49 198.4 216 50.5
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 8.1e-49 198.0 196 52.6
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 8.1e-49 198.0 195 47.2
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 9.0e-48 194.5 207 48.8
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 5.8e-47 191.8 189 49.2
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 1.3e-46 190.7 183 49.2
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 2.2e-46 189.9 203 46.8
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 3.8e-46 189.1 175 48.6
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 2.4e-45 186.4 161 53.4
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.0e-44 181.8 220 45.5
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 3.9e-43 179.1 127 59.8
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.9e-42 176.8 192 45.8
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.9e-42 176.8 244 39.8
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 5.6e-42 175.3 211 42.7
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.8e-41 172.9 234 41.5
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.4e-40 170.6 225 42.7
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 4.0e-40 169.1 210 39.5
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 6.4e-38 161.8 189 40.2
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.1e-37 161.0 257 40.1
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 9.3e-37 157.9 106 64.2
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 7.9e-36 154.8 114 60.5
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.1e-32 144.4 134 47.0
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 1.8e-32 143.7 151 51.0
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 3.0e-27 126.3 53 100.0
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 1.6e-25 120.6 140 45.0
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.4e-24 117.5 92 53.3
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 5.3e-24 115.5 67 76.1
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.2e-23 114.4 119 47.1
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 9.7e-18 94.7 61 59.0
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.9e-14 83.2 59 57.6
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.1e-13 81.3 61 49.2
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.4e-13 80.9 73 46.6
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.2e-13 79.7 97 49.5
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 5.5e-13 79.0 56 57.1
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 7.2e-13 78.6 152 31.6
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 9.4e-13 78.2 95 47.4
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 4.7e-12 75.9 125 43.2
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.0e-11 74.7 101 43.6
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.1e-10 71.2 52 65.4
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 9.7e-10 68.2 49 59.2
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 4.8e-09 65.9 51 62.7
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 4.8e-09 65.9 80 46.2
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 4.1e-08 62.8 154 25.3
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 8.5e-06 55.1 76 46.1


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