Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06649 Brassica carinata HOM05D007307 ORTHO05D009190 2.1e-266 921.8 460 100.0
A06p12000 Brassica napus HOM05D007307 ORTHO05D009190 6.2e-258 893.6 460 96.5
BraA06t24371Z Brassica rapa HOM05D007307 ORTHO05D009190 6.2e-258 893.6 460 96.5
BcaC05g25617 Brassica carinata HOM05D007307 ORTHO05D009190 3.4e-256 887.9 460 95.7
C05p14190 Brassica napus HOM05D007307 ORTHO05D009190 2.9e-255 884.8 460 95.4
Sp1g14290 Schrenkiella parvula HOM05D007307 ORTHO05D009190 1.4e-249 865.9 460 92.6
Thhalv10007586m.g Eutrema salsugineum HOM05D007307 ORTHO05D009190 5.8e-248 860.5 459 91.9
Carub.0001s1578 Capsella rubella HOM05D007307 ORTHO05D009190 1.9e-243 845.5 461 90.7
AT1G15980 Arabidopsis thaliana HOM05D007307 ORTHO05D009190 2.8e-242 841.6 460 90.0
CARHR016480 Cardamine hirsuta HOM05D007307 ORTHO05D009190 2.8e-242 841.6 460 90.0
AL1G28140 Arabidopsis lyrata HOM05D007307 ORTHO05D009190 3.6e-242 841.3 461 90.0
Aa31LG7G560 Aethionema arabicum HOM05D007307 ORTHO05D009190 1.4e-233 812.8 460 86.5
THA.LOC104813590 Tarenaya hassleriana HOM05D007307 ORTHO05D009190 3.2e-222 775.0 460 82.8
Thecc.06G041700 Theobroma cacao HOM05D007307 ORTHO05D009190 1.3e-202 709.9 460 77.0
Cpa.g.sc10.77 Carica papaya HOM05D007307 ORTHO05D009190 1.1e-201 706.8 465 74.6
Duzib192G1050 Durio zibethinus HOM05D007307 ORTHO05D009190 1.1e-201 706.8 460 77.0
Gorai.009G123800 Gossypium raimondii HOM05D007307 ORTHO05D009190 4.6e-197 691.4 460 75.0
Gohir.D05G120300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 1.8e-196 689.5 460 74.8
Manes.04G102400 Manihot esculenta HOM05D007307 ORTHO05D009190 1.8e-196 689.5 462 74.7
Atru.chr10.2412 Acer truncatum HOM05D007307 ORTHO05D009190 1.6e-194 682.9 464 73.3
CiPaw.02G162300 Carya illinoinensis HOM05D007307 ORTHO05D009190 1.6e-194 682.9 465 73.5
Ciclev10025544m.g Citrus clementina HOM05D007307 ORTHO05D009190 6.3e-194 681.0 458 73.4
ClCG09G003340 Citrullus lanatus HOM05D007307 ORTHO05D009190 5.3e-193 677.9 467 74.3
QL05p036096 Quercus lobata HOM05D007307 ORTHO05D009190 5.3e-193 677.9 468 72.2
CsaV3_7G031890 Cucumis sativus L. HOM05D007307 ORTHO05D009190 6.9e-193 677.6 444 75.0
MELO3C023468.2 Cucumis melo HOM05D007307 ORTHO05D009190 1.0e-191 673.7 424 77.4
Ca_20542_v3 Cicer arietinum L. HOM05D007307 ORTHO05D009190 1.7e-191 672.9 428 75.7
Eucgr.F03957 Eucalyptus grandis HOM05D007307 ORTHO05D009190 1.7e-191 672.9 472 71.0
MSTRG.11181 Avicennia marina HOM05D007307 ORTHO05D009190 1.1e-190 670.2 467 71.3
CDE04G0143 Ceratophyllum demersum HOM05D007307 ORTHO05D009190 3.2e-190 668.7 464 71.6
Lj3g0010338 Lotus japonicus HOM05D007307 ORTHO05D009190 4.2e-190 668.3 426 76.8
Glyma.08G218800 Glycine max HOM05D007307 ORTHO05D009190 7.2e-190 667.5 466 71.2
BolC5t30150H Brassica oleracea HOM05D007307 ORTHO05D009190 1.6e-189 666.4 340 95.3
FAN05G4298 Fragaria x ananassa HOM05D007307 ORTHO05D009190 4.6e-189 664.8 465 70.8
Nn2g12391 Nelumbo nucifera HOM05D007307 ORTHO05D009190 1.4e-188 663.3 414 77.3
RcHm_v2.0_Chr2g0132981 Rosa chinensis HOM05D007307 ORTHO05D009190 1.4e-188 663.3 465 71.0
GSVIVG01015957001 Vitis vinifera HOM05D007307 ORTHO05D009190 1.4e-188 663.3 461 71.6
Medtr4g007080 Medicago truncatula HOM05D007307 ORTHO05D009190 1.8e-188 662.9 426 75.1
Prupe.3G098200 Prunus persica HOM05D007307 ORTHO05D009190 1.8e-188 662.9 457 72.6
Cc04_g05100 Coffea canephora HOM05D007307 ORTHO05D009190 3.0e-188 662.1 465 71.0
FvH4_6g28640 Fragaria vesca HOM05D007307 ORTHO05D009190 3.0e-188 662.1 465 71.0
Psat7g260240 Pisum sativum HOM05D007307 ORTHO05D009190 3.0e-188 662.1 463 70.2
MD17G1223300 Malus domestica HOM05D007307 ORTHO05D009190 5.1e-188 661.4 414 78.0
TAR625G0746 Trochodendron aralioides HOM05D007307 ORTHO05D009190 5.1e-188 661.4 460 72.2
FAN14G3907 Fragaria x ananassa HOM05D007307 ORTHO05D009190 1.5e-187 659.8 465 70.8
Haze_16668 Corylus avellana HOM05D007307 ORTHO05D009190 2.0e-187 659.4 466 71.7
Glyma.07G023000 Glycine max HOM05D007307 ORTHO05D009190 2.0e-187 659.4 461 71.1
TPR.G23084 Trifolium pratense HOM05D007307 ORTHO05D009190 4.3e-187 658.3 467 70.0
Peaxi162Scf00332g00525 Petunia axillaris HOM05D007307 ORTHO05D009190 7.4e-187 657.5 459 71.0
FAN09G0915 Fragaria x ananassa HOM05D007307 ORTHO05D009190 1.3e-186 656.8 465 70.5
Sed0012177 Sechium edule HOM05D007307 ORTHO05D009190 1.3e-186 656.8 447 72.5
Lj5A80T58 Lonicera japonica HOM05D007307 ORTHO05D009190 2.8e-186 655.6 464 72.2
TWI18G0485 Tripterygium wilfordii HOM05D007307 ORTHO05D009190 3.7e-186 655.2 460 70.2
CSS0015248 Camellia sinensis var. sinensis HOM05D007307 ORTHO05D009190 8.2e-186 654.1 445 72.1
Nitab4.5_0002568g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 8.2e-186 654.1 465 69.9
PGSC0003DMG400019823 Solanum tuberosum HOM05D007307 ORTHO05D009190 1.1e-185 653.7 457 70.5
Phvul.010G161300 Phaseolus vulgaris HOM05D007307 ORTHO05D009190 1.4e-185 653.3 426 76.1
Nitab4.5_0012161g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 2.4e-185 652.5 465 69.5
Migut.I00693 Erythranthe guttata HOM05D007307 ORTHO05D009190 9.1e-185 650.6 466 68.9
Solyc03g116870.3 Solanum lycopersicum HOM05D007307 ORTHO05D009190 1.2e-184 650.2 454 70.9
Sopen03g035800 Solanum pennellii HOM05D007307 ORTHO05D009190 2.0e-184 649.4 452 71.0
AUR62026998 Chenopodium quinoa HOM05D007307 ORTHO05D009190 2.6e-184 649.0 461 70.5
Potri.001G044300 Populus trichocarpa HOM05D007307 ORTHO05D009190 5.9e-184 647.9 469 70.6
Actinidia25480 Actinidia chinensis HOM05D007307 ORTHO05D009190 7.7e-184 647.5 463 70.0
CAN.G407.66 Capsicum annuum HOM05D007307 ORTHO05D009190 8.5e-183 644.0 460 70.0
Lalb_Chr25g0278871 Lupinus albus HOM05D007307 ORTHO05D009190 3.2e-182 642.1 457 70.5
AUR62030838 Chenopodium quinoa HOM05D007307 ORTHO05D009190 5.5e-182 641.3 461 69.4
Lsat_1_v5_gn_5_8240 Lactuca sativa HOM05D007307 ORTHO05D009190 5.5e-182 641.3 471 67.7
HanXRQChr08g0235871 Helianthus annuus HOM05D007307 ORTHO05D009190 4.7e-181 638.3 470 67.4
SalBow7G3293 Salvia bowleyana HOM05D007307 ORTHO05D009190 2.3e-180 636.0 460 69.6
VMungo0331G1235 Vigna mungo HOM05D007307 ORTHO05D009190 3.9e-180 635.2 426 73.0
unitig_52.g17476 Utricularia gibba HOM05D007307 ORTHO05D009190 5.2e-180 634.8 452 69.9
EL10Ac3g06300 Beta vulgaris HOM05D007307 ORTHO05D009190 1.5e-179 633.3 453 69.1
ATR0739G128 Amborella trichopoda HOM05D007307 ORTHO05D009190 2.2e-178 629.4 414 74.2
CANSAT56G3714 Cannabis sativa HOM05D007307 ORTHO05D009190 2.2e-178 629.4 485 65.6
PSO170G4955 Papaver somniferum HOM05D007307 ORTHO05D009190 1.4e-177 626.7 462 67.7
Rhsim08G0205700 Rhododendron simsii HOM05D007307 ORTHO05D009190 1.4e-177 626.7 488 67.4
Sabra01G0030600 Salix brachista HOM05D007307 ORTHO05D009190 1.4e-177 626.7 511 65.0
Aqoxy7G01916 Aquilegia oxysepala HOM05D007307 ORTHO05D009190 2.4e-177 625.9 465 68.0
ECA246G2038 Erigeron canadensis HOM05D007307 ORTHO05D009190 5.3e-177 624.8 414 71.5
PSO017G5597 Papaver somniferum HOM05D007307 ORTHO05D009190 1.2e-176 623.6 462 67.3
arahy.Tifrunner.gnm1.ann1.X6E8D2 Arachis hypogaea HOM05D007307 ORTHO05D009190 5.9e-176 621.3 475 66.5
FAN02G3759 Fragaria x ananassa HOM05D007307 ORTHO05D009190 7.7e-176 620.9 407 74.4
Oeu051583.2 Olea europaea HOM05D007307 ORTHO05D009190 4.7e-173 611.7 396 75.8
Hma1.2p1_0109F.1_g052560 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 2.6e-171 605.9 459 66.9
Zm00001eb176730 Zea mays HOM05D007307 ORTHO05D009190 2.0e-163 579.7 411 65.9
DCAR_017649 Daucus carota HOM05D007307 ORTHO05D009190 7.5e-163 577.8 405 69.4
Zm00001eb412420 Zea mays HOM05D007307 ORTHO05D009190 9.1e-161 570.9 411 65.2
Os08g0276100 Oryza sativa ssp. japonica HOM05D007307 ORTHO05D009190 1.2e-160 570.5 413 65.1
Gohir.A05G119300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 5.9e-160 568.2 380 73.2
Dinv23284 Davidia involucrata HOM05D007307 ORTHO05D009190 5.0e-159 565.1 383 72.1
arahy.Tifrunner.gnm1.ann1.DFM3I4 Arachis hypogaea HOM05D007307 ORTHO05D009190 1.3e-146 523.9 475 59.8
COL.COLO4_26702 Corchorus olitorius HOM05D007307 ORTHO05D009190 1.4e-145 520.4 325 80.0
Ah.01g006960 Amaranthus hybridus HOM05D007307 ORTHO05D009190 5.4e-129 465.3 452 56.4
SMO364G0491 Selaginella moellendorffii HOM05D007307 ORTHO05D009190 2.5e-118 429.9 401 53.6
AagrBONN_evm.TU.Sc2ySwM_344.2748 Anthoceros agrestis HOM05D007307 ORTHO05D009190 4.4e-115 419.1 414 53.4
Pp3c9_19250 Physcomitrium patens HOM05D007307 ORTHO05D009190 5.8e-115 418.7 405 52.6
Pp3c15_23280 Physcomitrium patens HOM05D007307 ORTHO05D009190 4.2e-113 412.5 416 51.7
Mapoly0114s0017 Marchantia polymorpha HOM05D007307 ORTHO05D009190 1.5e-107 394.0 416 50.0
CBR_g34729 Chara braunii HOM05D007307 ORTHO05D009190 5.5e-97 359.0 415 46.5
Hma1.2p1_0109F.1_g052570 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 7.9e-72 275.4 192 69.3
Hund06518 Selenicereus undatus HOM05D007307 ORTHO05D009190 1.3e-66 258.1 187 69.0
SEGI_02712 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 3.0e-63 246.9 203 63.1
SEGI_37660 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 3.0e-63 246.9 203 63.1
SEGI_25940 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 7.0e-52 209.1 147 63.9
Actinidia18248 Actinidia chinensis HOM05D007307 ORTHO05D009190 1.8e-23 114.8 88 65.9
Lj5A80T54 Lonicera japonica HOM05D007307 ORTHO05D009190 3.2e-20 104.0 62 79.0


User provided reference genes

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