Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06616 Brassica carinata HOM05D003293 ORTHO05D005060 2.4e-84 315.5 162 100.0
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 3.7e-56 221.9 185 67.6
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 8.2e-56 220.7 185 67.0
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 8.2e-56 220.7 185 67.0
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 8.2e-56 220.7 185 67.0
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 8.2e-56 220.7 185 67.0
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 8.2e-56 220.7 186 66.7
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 1.4e-55 219.9 184 67.4
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 1.4e-55 219.9 185 66.5
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.8e-55 219.5 185 66.5
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 3.1e-55 218.8 184 66.8
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 6.9e-55 217.6 185 66.5
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 9.0e-55 217.2 184 66.3
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 3.4e-54 215.3 184 66.3
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 5.5e-52 208.0 185 63.8
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 5.5e-52 208.0 185 63.8
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 7.2e-52 207.6 184 64.1
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.2e-51 206.8 184 63.6
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 1.6e-51 206.5 184 63.6
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 2.7e-51 205.7 183 63.9
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 2.7e-51 205.7 184 63.6
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 2.7e-51 205.7 184 63.0
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 3.5e-51 205.3 185 61.6
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 4.6e-51 204.9 184 63.0
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 4.6e-51 204.9 186 63.4
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 6.1e-51 204.5 184 64.1
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 6.1e-51 204.5 184 62.5
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 6.1e-51 204.5 184 63.0
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 7.9e-51 204.1 184 63.0
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 7.9e-51 204.1 185 63.2
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 1.8e-50 203.0 184 63.0
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 1.8e-50 203.0 184 63.0
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 1.8e-50 203.0 184 63.0
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 1.8e-50 203.0 184 62.5
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 1.8e-50 203.0 184 62.5
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 1.8e-50 203.0 184 60.9
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 2.3e-50 202.6 186 61.3
Nitab4.5_0003468g0030 Nicotiana tabacum HOM05D003293 ORTHO05D005060 2.3e-50 202.6 186 61.3
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 3.0e-50 202.2 184 62.5
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 3.9e-50 201.8 185 62.2
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 3.9e-50 201.8 184 62.5
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 3.9e-50 201.8 184 62.5
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 3.9e-50 201.8 184 62.5
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 5.1e-50 201.4 185 61.1
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 5.1e-50 201.4 185 61.6
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 6.7e-50 201.1 185 62.2
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 6.7e-50 201.1 184 62.5
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 8.7e-50 200.7 185 61.1
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.1e-49 200.3 166 66.3
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 1.5e-49 199.9 185 60.5
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 1.5e-49 199.9 185 60.5
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 1.5e-49 199.9 185 60.5
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.5e-49 199.9 184 61.4
Eucgr.L02511 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.5e-49 199.9 184 61.4
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.5e-49 199.9 186 63.4
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.9e-49 199.5 184 62.0
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.9e-49 199.5 184 62.0
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 1.9e-49 199.5 186 60.8
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.9e-49 199.5 184 62.0
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 2.5e-49 199.1 184 60.3
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 2.5e-49 199.1 184 62.0
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 3.3e-49 198.7 185 59.5
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 3.3e-49 198.7 184 62.0
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 3.3e-49 198.7 184 62.0
Nitab4.5_0005442g0040 Nicotiana tabacum HOM05D003293 ORTHO05D005060 4.3e-49 198.4 186 60.2
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 5.7e-49 198.0 185 60.0
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 5.7e-49 198.0 184 62.5
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 7.4e-49 197.6 185 61.6
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 9.7e-49 197.2 185 60.5
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 9.7e-49 197.2 186 60.8
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.3e-48 196.8 185 58.9
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.3e-48 196.8 184 60.3
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 1.3e-48 196.8 185 60.5
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 1.3e-48 196.8 185 60.5
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 1.3e-48 196.8 181 63.0
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 1.3e-48 196.8 174 63.2
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 1.6e-48 196.4 184 60.3
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.6e-48 196.4 186 62.4
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 2.2e-48 196.1 184 59.2
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 2.2e-48 196.1 185 60.0
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 2.2e-48 196.1 185 61.1
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 2.2e-48 196.1 186 60.2
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 2.8e-48 195.7 185 60.5
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 2.8e-48 195.7 185 60.0
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 2.8e-48 195.7 185 60.0
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 2.8e-48 195.7 186 60.2
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 3.7e-48 195.3 186 60.8
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 3.7e-48 195.3 185 60.0
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 4.8e-48 194.9 184 59.2
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 4.8e-48 194.9 185 58.4
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 4.8e-48 194.9 185 60.0
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 4.8e-48 194.9 184 61.4
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 4.8e-48 194.9 186 61.8
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 6.3e-48 194.5 184 60.3
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 6.3e-48 194.5 185 61.1
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 8.2e-48 194.1 184 59.2
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 8.2e-48 194.1 185 58.9
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 8.2e-48 194.1 184 60.3
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 8.2e-48 194.1 185 58.9
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 8.2e-48 194.1 185 60.5
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 8.2e-48 194.1 185 60.5
RcHm_v2.0_Chr5g0023561 Rosa chinensis HOM05D003293 ORTHO05D005060 1.1e-47 193.7 185 61.1
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 1.1e-47 193.7 185 59.5
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 1.4e-47 193.4 184 59.2
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 1.8e-47 193.0 184 60.3
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 1.8e-47 193.0 185 58.9
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 1.8e-47 193.0 185 60.0
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 2.4e-47 192.6 184 58.7
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.4e-47 192.6 183 60.1
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 2.4e-47 192.6 185 61.6
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 4.1e-47 191.8 184 58.7
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 5.3e-47 191.4 185 60.0
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 5.3e-47 191.4 184 60.3
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 5.3e-47 191.4 184 59.2
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 6.9e-47 191.0 184 59.2
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 6.9e-47 191.0 186 59.7
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 6.9e-47 191.0 186 59.7
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.2e-46 190.3 185 61.1
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 1.5e-46 189.9 185 57.8
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 2.0e-46 189.5 186 59.1
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 2.0e-46 189.5 184 58.7
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 2.0e-46 189.5 155 68.4
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 2.6e-46 189.1 185 57.8
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 3.4e-46 188.7 184 58.2
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 4.5e-46 188.3 184 59.2
Rhsim10G0161300 Rhododendron simsii HOM05D003293 ORTHO05D005060 5.9e-46 188.0 184 60.9
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 2.2e-45 186.0 186 56.5
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 8.5e-45 184.1 185 57.3
Cpa.g.c45345 Carica papaya HOM05D003293 ORTHO05D005060 2.5e-44 182.6 134 72.4
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 2.5e-44 182.6 215 53.0
HPP92_020646 Vanilla planifolia HOM05D003293 ORTHO05D005060 2.5e-44 182.6 184 58.2
arahy.Tifrunner.gnm1.ann1.59CN8W Arachis hypogaea HOM05D003293 ORTHO05D005060 5.5e-44 181.4 182 56.6
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 7.2e-44 181.0 179 60.3
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 1.4e-42 176.8 175 56.6
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 2.3e-42 176.0 186 55.9
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 2.8e-40 169.1 175 52.6
Zm00001eb213620 Zea mays HOM05D003293 ORTHO05D005060 2.4e-39 166.0 179 55.3
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 6.9e-39 164.5 186 52.2
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 9.1e-39 164.1 255 44.3
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 2.6e-38 162.5 185 48.1
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 2.6e-38 162.5 184 52.2
Pp3c1_34170 Physcomitrium patens HOM05D003293 ORTHO05D005060 2.6e-38 162.5 184 52.2
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 3.8e-37 158.7 175 50.9
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 2.3e-34 149.4 183 45.9
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 8.8e-34 147.5 184 47.3
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 5.7e-33 144.8 182 49.5
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 1.8e-31 139.8 146 57.5
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 2.4e-31 139.4 184 44.6
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 5.3e-31 138.3 176 44.9
Gohir.D13G220550 Gossypium hirsutum HOM05D003293 ORTHO05D022137 9.1e-31 137.5 146 56.8
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 6.5e-29 131.3 103 68.0
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.9e-28 129.8 131 57.3
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 1.0e-26 124.0 181 38.7
BcaC05g25580 Brassica carinata HOM05D003293 ORTHO05D005060 8.8e-26 120.9 77 84.4
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 1.1e-25 120.6 110 61.8
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.3e-24 117.1 110 60.9
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 3.1e-23 112.5 112 60.7
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 7.0e-23 111.3 111 58.6
ATR0810G033 Amborella trichopoda HOM05D003293 ORTHO05D005060 3.2e-20 102.4 102 57.8
Actinidia26213 Actinidia chinensis HOM05D003293 ORTHO05D005060 5.5e-20 101.7 83 65.1
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 5.5e-20 101.7 106 57.5
Rhsim01G0232100 Rhododendron simsii HOM05D003293 ORTHO05D013446 3.7e-16 89.0 62 79.0
Hma1.2p1_0142F.1_g064350 Hydrangea macrophylla HOM05D003293 ORTHO05D022137 1.1e-15 87.4 62 71.0
Actinidia24661 Actinidia chinensis HOM05D003293 ORTHO05D005060 5.4e-15 85.1 55 81.8
CSS0007137 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D022137 7.0e-15 84.7 63 68.3
Cfa025892 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.3e-13 80.5 132 42.4
arahy.Tifrunner.gnm1.ann1.K3F60Q Arachis hypogaea HOM05D003293 ORTHO05D005060 1.1e-12 77.4 113 46.9
Rhsim01G0231900 Rhododendron simsii HOM05D003293 ORTHO05D022137 4.2e-12 75.5 58 65.5
CsaV3_3G034300 Cucumis sativus L. HOM05D003293 ORTHO05D022137 6.1e-11 71.6 48 72.9
Haze_27383 Corylus avellana HOM05D003293 ORTHO05D044783 2.6e-09 66.2 147 33.3


User provided reference genes

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