Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06615 Brassica carinata HOM05D003293 ORTHO05D094743 6.0e-39 163.7 82 100.0
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 3.9e-22 107.8 78 71.8
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 3.9e-22 107.8 78 71.8
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 3.9e-22 107.8 78 71.8
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 1.1e-21 106.3 78 70.5
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.1e-21 106.3 78 70.5
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 1.1e-21 106.3 78 70.5
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 1.5e-21 105.9 78 70.5
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 1.5e-21 105.9 78 70.5
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 2.5e-21 105.1 78 70.5
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 9.6e-21 103.2 78 69.2
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.3e-20 102.8 78 67.9
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 8.1e-20 100.1 78 66.7
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 1.1e-19 99.8 78 66.7
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 6.9e-19 97.1 78 62.8
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 1.7e-17 92.4 78 61.5
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 2.2e-17 92.0 78 60.3
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 2.9e-17 91.7 78 61.5
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 2.9e-17 91.7 78 61.5
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 2.9e-17 91.7 78 61.5
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 8.4e-17 90.1 78 60.3
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 1.4e-16 89.4 78 60.3
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.9e-16 89.0 78 59.0
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 2.5e-16 88.6 78 57.7
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 2.5e-16 88.6 78 57.7
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 4.2e-16 87.8 78 60.3
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 4.2e-16 87.8 78 59.0
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 5.5e-16 87.4 76 59.2
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 7.1e-16 87.0 109 48.6
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 9.3e-16 86.7 78 55.1
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 2.1e-15 85.5 78 56.4
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 2.1e-15 85.5 61 67.2
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 2.1e-15 85.5 57 73.7
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 2.7e-15 85.1 79 53.2
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 2.7e-15 85.1 48 81.2
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 2.7e-15 85.1 48 81.2
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 2.7e-15 85.1 48 81.2
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 4.6e-15 84.3 78 52.6
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 1.3e-14 82.8 64 62.5
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.3e-14 82.8 79 54.4
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 2.3e-14 82.0 48 77.1
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.3e-14 82.0 48 77.1
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.3e-14 82.0 48 77.1
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.3e-14 82.0 48 77.1
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 5.1e-14 80.9 78 55.1
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 5.1e-14 80.9 61 63.9
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 8.7e-14 80.1 80 55.0
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 8.7e-14 80.1 80 55.0
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 8.7e-14 80.1 64 60.9
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 1.1e-13 79.7 48 75.0
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 1.1e-13 79.7 61 63.9
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.1e-13 79.7 81 53.1
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.5e-13 79.3 48 77.1
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 1.5e-13 79.3 60 66.7
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 1.9e-13 79.0 80 53.8
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.9e-13 79.0 60 61.7
RcHm_v2.0_Chr4g0401281 Rosa chinensis HOM05D003293 ORTHO05D013446 1.9e-13 79.0 61 62.3
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 3.3e-13 78.2 57 66.7
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 3.3e-13 78.2 57 66.7
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 4.3e-13 77.8 80 52.5
RcHm_v2.0_Chr2g0155871 Rosa chinensis HOM05D003293 ORTHO05D013446 5.7e-13 77.4 61 62.3
RcHm_v2.0_Chr7g0231801 Rosa chinensis HOM05D003293 ORTHO05D013446 5.7e-13 77.4 61 62.3
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 1.3e-12 76.3 64 57.8
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 1.6e-12 75.9 77 53.2
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 2.1e-12 75.5 50 68.0
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 2.8e-12 75.1 48 68.8
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 2.8e-12 75.1 63 58.7
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 2.8e-12 75.1 48 68.8
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 3.7e-12 74.7 60 63.3
HPP92_020646 Vanilla planifolia HOM05D003293 ORTHO05D005060 4.8e-12 74.3 48 66.7
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 6.2e-12 73.9 48 70.8
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 1.1e-11 73.2 64 59.4
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.4e-11 72.8 49 67.3
Eucgr.L02511 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.4e-11 72.8 49 67.3
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 1.4e-11 72.8 77 51.9
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.4e-11 72.8 48 66.7
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 2.4e-11 72.0 48 66.7
Rhsim10G0161300 Rhododendron simsii HOM05D003293 ORTHO05D005060 2.4e-11 72.0 48 68.8
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 2.4e-11 72.0 64 59.4
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 3.1e-11 71.6 61 60.7
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 3.1e-11 71.6 65 55.4
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 3.1e-11 71.6 48 66.7
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 4.0e-11 71.2 49 71.4
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 4.0e-11 71.2 48 64.6
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 4.0e-11 71.2 57 56.1
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 4.0e-11 71.2 48 66.7
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 5.3e-11 70.9 48 64.6
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 5.3e-11 70.9 63 55.6
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 5.3e-11 70.9 78 47.4
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 6.9e-11 70.5 73 53.4
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 9.0e-11 70.1 48 66.7
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 9.0e-11 70.1 61 60.7
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 1.2e-10 69.7 48 66.7
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 1.2e-10 69.7 57 56.1
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.2e-10 69.7 48 64.6
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.2e-10 69.7 48 66.7
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.5e-10 69.3 49 63.3
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 1.5e-10 69.3 61 60.7
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 1.5e-10 69.3 61 54.1
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 2.0e-10 68.9 49 69.4
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 2.0e-10 68.9 78 46.2
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 2.0e-10 68.9 78 46.2
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 2.6e-10 68.6 71 49.3
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 2.6e-10 68.6 48 62.5
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 3.4e-10 68.2 61 59.0
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 3.4e-10 68.2 48 62.5
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 4.5e-10 67.8 49 67.3
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 4.5e-10 67.8 49 67.3
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 4.5e-10 67.8 49 67.3
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 5.8e-10 67.4 48 64.6
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 1.0e-09 66.6 58 60.3
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 1.3e-09 66.2 61 57.4
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 1.3e-09 66.2 80 50.0
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 1.7e-09 65.9 48 62.5
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 1.7e-09 65.9 73 49.3
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 2.9e-09 65.1 48 56.2
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 2.9e-09 65.1 48 62.5
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 3.8e-09 64.7 48 60.4
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 5.0e-09 64.3 51 58.8
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 5.0e-09 64.3 61 59.0
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 6.5e-09 63.9 51 56.9
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 8.4e-09 63.5 48 54.2
Nitab4.5_0005442g0040 Nicotiana tabacum HOM05D003293 ORTHO05D005060 8.4e-09 63.5 48 58.3
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 1.9e-08 62.4 48 54.2
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 1.9e-08 62.4 48 58.3
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 1.9e-08 62.4 46 63.0
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 1.9e-08 62.4 46 63.0
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 1.9e-08 62.4 46 63.0
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 2.5e-08 62.0 58 51.7
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 3.2e-08 61.6 64 46.9
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 7.1e-08 60.5 77 46.8
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 9.3e-08 60.1 48 56.2
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 1.2e-07 59.7 64 46.9
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 1.2e-07 59.7 48 60.4
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 1.2e-07 59.7 48 56.2
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 1.2e-07 59.7 48 56.2
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 1.6e-07 59.3 49 57.1
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 2.7e-07 58.5 33 78.8
RcHm_v2.0_Chr2g0101951 Rosa chinensis HOM05D003293 ORTHO05D013446 4.6e-07 57.8 56 57.1
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 4.6e-07 57.8 56 57.1
RcHm_v2.0_Chr7g0234111 Rosa chinensis HOM05D003293 ORTHO05D013446 4.6e-07 57.8 56 57.1
RcHm_v2.0_Chr7g0238791 Rosa chinensis HOM05D003293 ORTHO05D013446 4.6e-07 57.8 56 57.1
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 6.1e-07 57.4 57 52.6
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 7.9e-07 57.0 48 54.2
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 1.3e-06 56.2 48 54.2
ATR0810G033 Amborella trichopoda HOM05D003293 ORTHO05D005060 2.3e-06 55.5 35 68.6
Gohir.D13G220550 Gossypium hirsutum HOM05D003293 ORTHO05D022137 2.3e-06 55.5 33 75.8
RcHm_v2.0_Chr1g0350061 Rosa chinensis HOM05D003293 ORTHO05D013446 3.0e-06 55.1 56 55.4
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 3.9e-06 54.7 48 52.1
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 3.9e-06 54.7 41 63.4
Pp3c1_34170 Physcomitrium patens HOM05D003293 ORTHO05D005060 3.9e-06 54.7 41 63.4
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 6.7e-06 53.9 48 52.1
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 8.7e-06 53.5 77 42.9
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 8.7e-06 53.5 77 44.2


User provided reference genes

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