Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 8.3e-174 613.6 309 100.0
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 1.9e-170 602.4 309 97.4
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 2.5e-170 602.1 309 97.4
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 5.5e-170 600.9 309 98.1
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 3.6e-169 598.2 309 97.4
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 4.7e-169 597.8 309 97.4
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 1.1e-162 576.6 313 93.9
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 5.2e-160 567.8 313 92.0
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 7.0e-157 557.4 313 89.5
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 9.2e-157 557.0 314 89.2
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 2.9e-155 552.0 314 88.5
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 1.8e-152 542.7 314 88.2
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 2.9e-150 535.4 309 87.4
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 1.9e-149 532.7 310 85.2
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.3e-147 525.8 312 86.2
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.3e-147 525.8 312 86.2
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 6.2e-145 517.7 311 85.9
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 2.0e-143 512.7 313 83.4
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 5.4e-133 478.0 309 78.0
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 7.1e-133 477.6 269 84.4
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 1.2e-132 476.9 269 84.0
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.7e-132 475.7 270 84.4
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 4.6e-132 474.9 265 84.5
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 6.0e-132 474.6 318 77.4
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.0e-132 474.6 270 84.1
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 2.3e-131 472.6 318 76.7
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 3.0e-131 472.2 312 76.0
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 5.1e-131 471.5 305 76.1
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 8.6e-131 470.7 315 75.6
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.3e-130 468.8 270 83.0
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 4.3e-130 468.4 277 81.6
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 5.6e-130 468.0 290 79.7
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 5.6e-130 468.0 282 80.5
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.6e-130 468.0 270 83.3
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 9.6e-130 467.2 307 76.2
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 1.6e-129 466.5 277 81.9
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 2.8e-129 465.7 269 81.8
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 6.2e-129 464.5 296 77.0
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.8e-128 463.0 262 84.4
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 3.1e-128 462.2 277 82.3
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 8.9e-128 460.7 270 81.1
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 2.0e-127 459.5 313 73.2
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 2.6e-127 459.1 309 73.5
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 4.4e-127 458.4 255 83.5
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 9.9e-127 457.2 261 83.5
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.3e-126 456.8 315 73.0
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 1.7e-126 456.4 298 76.5
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 1.7e-126 456.4 269 80.7
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 2.9e-126 455.7 254 84.6
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 2.9e-126 455.7 308 75.3
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 3.8e-126 455.3 295 76.3
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 8.4e-126 454.1 295 75.9
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 8.4e-126 454.1 254 83.5
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.1e-125 453.8 295 74.2
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 1.9e-125 453.0 267 80.5
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.4e-125 452.6 294 75.9
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 3.2e-125 452.2 261 82.8
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 4.2e-125 451.8 263 82.9
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 4.2e-125 451.8 261 80.5
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 4.2e-125 451.8 308 74.4
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 5.4e-125 451.4 306 73.5
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 9.3e-125 450.7 262 82.4
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 9.3e-125 450.7 255 82.4
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 9.3e-125 450.7 281 77.6
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.6e-124 449.9 297 74.1
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.6e-124 449.9 319 72.4
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.0e-124 448.0 270 81.1
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 1.3e-123 446.8 286 76.6
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 1.7e-123 446.4 304 73.0
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 2.3e-123 446.0 270 78.9
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 3.9e-123 445.3 286 75.9
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 5.1e-123 444.9 281 75.1
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 6.6e-123 444.5 300 74.7
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 1.1e-122 443.7 289 74.4
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 4.3e-122 441.8 306 72.5
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 4.3e-122 441.8 251 82.1
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 7.3e-122 441.0 275 76.7
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 9.6e-122 440.7 262 79.0
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.3e-121 440.3 282 74.5
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 3.1e-120 435.6 243 82.7
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 3.1e-120 435.6 243 82.7
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 3.1e-120 435.6 306 71.2
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 4.0e-120 435.3 280 73.6
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 5.3e-120 434.9 301 72.1
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 6.9e-120 434.5 305 71.5
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 6.9e-120 434.5 292 72.6
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 6.9e-120 434.5 275 76.0
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 6.9e-120 434.5 291 74.2
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 9.0e-120 434.1 305 71.5
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 2.6e-119 432.6 302 71.9
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 7.6e-119 431.0 305 68.5
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 9.9e-119 430.6 243 81.5
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 4.9e-118 428.3 243 82.3
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 6.6e-115 417.9 252 79.4
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 2.1e-113 412.9 261 77.0
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 3.3e-106 389.0 303 67.7
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 7.4e-106 387.9 269 69.5
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 8.1e-105 384.4 219 83.6
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 1.6e-100 370.2 279 64.9
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 1.6e-100 370.2 259 67.6
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.3e-99 367.1 281 61.6
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 1.8e-99 366.7 264 73.1
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 9.6e-98 360.9 300 61.3
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.6e-95 352.8 270 69.3
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 2.5e-93 346.3 272 61.8
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 7.2e-93 344.7 199 83.9
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 3.5e-92 342.4 192 85.4
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 1.1e-90 337.4 192 81.2
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 5.7e-90 335.1 192 80.7
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.3e-89 334.0 190 83.7
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 2.8e-89 332.8 263 61.6
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 1.2e-87 327.4 190 81.6
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 4.5e-87 325.5 224 72.3
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.2e-84 317.4 268 60.1
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.6e-84 317.0 173 85.0
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.0e-83 314.3 243 60.1
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.3e-81 307.4 187 80.2
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 9.7e-74 281.2 210 68.6
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.2e-68 264.2 256 54.3
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 1.6e-60 237.3 188 63.8
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.8e-59 233.8 256 52.3
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 5.2e-59 232.3 173 68.2
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 7.3e-37 158.7 132 59.1
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 4.7e-36 156.0 274 37.2
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 2.2e-33 147.1 82 80.5
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 8.3e-25 118.6 325 30.2
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 8.1e-20 102.1 300 30.7
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 8.1e-20 102.1 71 66.2
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 1.8e-19 100.9 65 72.3
CARHR016590 Cardamine hirsuta HOM05D006171 ORTHO05D007294 3.8e-17 93.2 82 79.3
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 6.6e-14 82.4 104 51.0
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.5e-13 80.5 74 59.5


User provided reference genes

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