Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 2.5e-218 761.9 419 100.0
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 1.7e-201 706.1 419 92.8
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-182 643.3 419 87.6
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 1.3e-182 643.3 419 87.6
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 3.1e-176 622.1 429 83.0
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.6e-167 593.2 422 78.2
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 2.0e-167 592.8 422 78.2
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.9e-160 569.7 454 72.5
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 3.1e-155 552.4 422 76.8
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 1.9e-152 543.1 417 76.0
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 2.4e-128 463.0 260 95.0
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 1.2e-127 460.7 260 95.4
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.2e-122 444.1 415 63.4
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 4.5e-122 442.2 415 62.9
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 2.2e-121 439.9 417 62.1
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 2.2e-121 439.9 416 63.0
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 6.4e-121 438.3 416 63.9
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.1e-120 437.6 322 75.8
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.4e-120 437.2 415 62.4
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 5.5e-120 435.3 425 62.4
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 9.3e-120 434.5 418 61.7
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.1e-119 433.3 403 64.3
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 1.3e-118 430.6 416 62.5
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 1.8e-118 430.3 322 76.4
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 5.1e-118 428.7 406 62.1
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 6.7e-118 428.3 423 60.5
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.9e-117 426.8 422 60.2
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 7.4e-117 424.9 408 61.8
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 1.6e-116 423.7 426 59.9
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.8e-116 422.9 402 62.7
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.7e-116 422.5 422 60.2
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.1e-115 421.0 416 60.1
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.1e-115 421.0 398 62.1
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 4.0e-115 419.1 417 60.4
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 6.9e-115 418.3 421 59.9
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 9.0e-115 417.9 413 61.0
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.2e-114 417.5 425 60.9
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 2.0e-114 416.8 400 61.2
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 5.8e-114 415.2 413 60.5
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 1.0e-113 414.5 422 61.6
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 1.0e-113 414.5 261 87.7
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 1.0e-113 414.5 425 57.9
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 2.2e-113 413.3 398 61.1
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 2.2e-113 413.3 423 58.9
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 2.9e-113 412.9 421 59.4
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 3.8e-113 412.5 421 59.4
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 4.9e-113 412.1 414 59.7
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 4.2e-112 409.1 369 65.0
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 7.1e-112 408.3 430 57.7
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.6e-111 407.1 424 57.8
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 3.5e-111 406.0 431 59.4
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.9e-111 404.8 403 60.3
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 1.5e-109 400.6 426 58.5
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 2.5e-109 399.8 422 57.8
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 3.3e-109 399.4 424 56.8
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 3.3e-109 399.4 456 56.4
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 4.3e-109 399.1 427 58.5
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 7.4e-109 398.3 450 55.1
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 2.8e-108 396.4 399 58.4
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 8.2e-108 394.8 422 56.9
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 4.1e-107 392.5 406 58.9
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 5.3e-107 392.1 437 55.4
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 6.9e-107 391.7 430 57.9
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 9.0e-107 391.3 449 54.6
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.5e-106 390.6 416 58.4
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 2.0e-106 390.2 370 63.5
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.6e-106 389.8 425 56.9
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 5.9e-106 388.7 415 57.6
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.3e-105 387.5 427 58.3
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 6.5e-105 385.2 414 58.7
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 1.4e-104 384.0 418 57.9
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 9.3e-104 381.3 415 56.4
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.2e-103 380.9 397 59.2
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.6e-103 380.6 375 60.3
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.6e-103 379.4 422 56.4
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 3.6e-103 379.4 412 57.8
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.1e-103 378.6 425 55.8
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 7.9e-103 378.3 414 56.0
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.0e-102 377.9 408 58.1
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.0e-102 377.9 405 57.8
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 4.3e-101 372.5 415 56.6
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.7e-100 370.5 265 78.1
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 3.7e-100 369.4 420 55.0
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 1.8e-99 367.1 419 54.7
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 4.5e-98 362.5 409 54.3
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 7.7e-98 361.7 390 55.6
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 7.7e-98 361.7 416 55.3
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.3e-97 360.9 420 55.2
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.2e-95 354.4 424 55.2
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 1.0e-94 351.3 420 55.2
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.4e-94 350.9 418 55.7
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 7.4e-93 345.1 388 53.9
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 9.7e-93 344.7 472 49.8
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 2.8e-92 343.2 418 54.1
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.0e-90 337.0 409 52.6
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 3.4e-90 336.3 403 54.1
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 4.5e-90 335.9 423 52.7
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 4.5e-90 335.9 409 52.3
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.3e-89 334.3 403 53.8
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.3e-89 334.3 399 53.9
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 3.8e-89 332.8 409 53.5
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.2e-87 327.8 409 53.3
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 8.8e-86 321.6 281 65.8
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 8.8e-86 321.6 413 53.0
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.6e-85 320.1 283 64.0
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 3.7e-84 316.2 394 52.5
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 3.1e-83 313.2 428 49.8
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 4.1e-83 312.8 398 50.8
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 5.0e-81 305.8 417 48.9
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 2.7e-79 300.1 403 49.1
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.3e-78 297.0 332 55.1
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 8.8e-78 295.0 450 46.2
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 1.5e-77 294.3 297 60.6
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 5.7e-77 292.4 379 52.5
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.7e-76 290.8 435 49.7
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 1.3e-73 281.2 315 54.9
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 6.1e-71 272.3 402 47.8
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 3.7e-68 263.1 324 52.5
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 3.1e-67 260.0 263 60.1
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 7.0e-67 258.8 302 56.0
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.9e-64 250.8 262 56.5
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 5.5e-64 249.2 267 61.0
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 2.3e-62 243.8 273 55.7
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 1.7e-60 237.7 257 58.8
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 2.4e-59 233.8 430 41.9
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 9.2e-59 231.9 161 80.7
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 8.6e-57 225.3 164 75.0
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.0e-54 218.4 436 38.8
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 4.4e-53 213.0 259 54.8
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 8.3e-52 208.8 158 78.5
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.4e-51 207.2 344 45.1
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 6.0e-50 202.6 187 62.0
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.3e-49 201.4 455 37.6
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 2.5e-48 197.2 259 50.6
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 3.1e-46 190.3 136 71.3
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 5.2e-46 189.5 135 71.1
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.2e-45 188.3 377 38.7
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 3.2e-43 180.3 351 41.6
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 9.9e-37 158.7 187 57.8
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 2.1e-31 141.0 125 70.4
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 2.8e-31 140.6 200 49.5
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 5.2e-30 136.3 113 63.7
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 3.4e-29 133.7 470 31.1
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 1.8e-22 111.3 114 50.9
C01p32800 Brassica napus HOM05D005050 ORTHO05D023932 2.1e-15 87.8 56 76.8
BcaC05g25214 Brassica carinata HOM05D008776 ORTHO05D005587 8.1e-15 85.9 56 75.0
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 7.1e-11 72.8 229 36.7
BolC8t48089H Brassica oleracea HOM05D019496 ORTHO05D019976 5.1e-09 66.6 104 44.2
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 6.7e-09 66.2 88 44.3
C05p47770 Brassica napus HOM05D019496 ORTHO05D019976 8.7e-09 65.9 104 44.2
BcaC02g09385 Brassica carinata HOM05D019496 ORTHO05D019976 7.4e-08 62.8 73 53.4
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 1.1e-06 58.9 108 38.9


User provided reference genes

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