Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 2.9e-69 265.0 124 100.0
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 1.0e-37 160.2 93 81.7
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 2.9e-37 158.7 93 81.7
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 2.3e-34 149.1 97 74.2
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 2.0e-30 136.0 66 89.4
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 2.0e-30 136.0 66 89.4
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 2.0e-30 136.0 88 71.6
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 4.5e-30 134.8 79 77.2
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 7.7e-30 134.0 65 89.2
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 1.7e-29 132.9 108 61.1
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 2.2e-29 132.5 78 74.4
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 2.2e-29 132.5 78 74.4
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 2.9e-29 132.1 78 74.4
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 5.0e-29 131.3 67 83.6
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 5.0e-29 131.3 117 60.7
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 6.5e-29 131.0 65 87.7
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 8.5e-29 130.6 65 87.7
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 8.5e-29 130.6 66 84.8
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 8.5e-29 130.6 65 86.2
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 8.5e-29 130.6 66 84.8
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 1.5e-28 129.8 65 86.2
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 1.5e-28 129.8 65 86.2
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.9e-28 129.4 60 95.0
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 2.5e-28 129.0 80 75.0
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 3.2e-28 128.6 85 72.9
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 3.2e-28 128.6 65 84.6
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 3.2e-28 128.6 100 62.0
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 3.2e-28 128.6 65 84.6
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 3.2e-28 128.6 65 84.6
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.5e-28 127.9 63 88.9
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 7.2e-28 127.5 60 90.0
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 7.2e-28 127.5 60 90.0
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 7.2e-28 127.5 78 74.4
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 7.2e-28 127.5 65 86.2
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 9.4e-28 127.1 60 90.0
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.6e-27 126.3 64 85.9
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 2.1e-27 125.9 65 84.6
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 2.1e-27 125.9 60 90.0
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 2.1e-27 125.9 65 83.1
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 2.7e-27 125.6 65 83.1
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 2.7e-27 125.6 66 80.3
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 2.7e-27 125.6 64 87.5
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 2.7e-27 125.6 64 87.5
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 3.6e-27 125.2 64 85.9
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 3.6e-27 125.2 65 83.1
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 6.1e-27 124.4 69 78.3
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 6.1e-27 124.4 82 70.7
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 8.0e-27 124.0 66 81.8
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 8.0e-27 124.0 71 76.1
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 8.0e-27 124.0 65 83.1
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.0e-26 123.6 65 83.1
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.4e-26 123.2 64 84.4
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.4e-26 123.2 66 81.8
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.4e-26 123.2 65 83.1
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 1.4e-26 123.2 65 81.5
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.4e-26 123.2 65 83.1
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.8e-26 122.9 72 73.6
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 1.8e-26 122.9 66 80.3
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 3.0e-26 122.1 65 80.0
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 3.0e-26 122.1 95 63.2
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 3.0e-26 122.1 65 81.5
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 4.0e-26 121.7 67 76.1
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 4.0e-26 121.7 67 79.1
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 4.0e-26 121.7 60 85.0
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 5.2e-26 121.3 60 85.0
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 5.2e-26 121.3 65 81.5
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 6.7e-26 120.9 66 80.3
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 6.7e-26 120.9 72 75.0
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 8.8e-26 120.6 65 81.5
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 8.8e-26 120.6 64 81.2
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.1e-25 120.2 65 81.5
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 1.1e-25 120.2 64 81.2
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 1.1e-25 120.2 65 81.5
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 1.1e-25 120.2 65 80.0
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 1.5e-25 119.8 65 81.5
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 2.6e-25 119.0 59 86.4
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 2.6e-25 119.0 65 80.0
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.6e-25 119.0 65 80.0
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.6e-25 119.0 65 80.0
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 2.6e-25 119.0 65 78.5
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 4.4e-25 118.2 64 76.6
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 4.4e-25 118.2 64 79.7
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 4.4e-25 118.2 84 65.5
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 5.7e-25 117.9 64 81.2
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 5.7e-25 117.9 64 81.2
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 5.7e-25 117.9 65 76.9
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 5.7e-25 117.9 60 81.7
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 5.7e-25 117.9 60 81.7
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 5.7e-25 117.9 70 74.3
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 7.5e-25 117.5 64 78.1
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 7.5e-25 117.5 65 78.5
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 9.7e-25 117.1 60 83.3
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.3e-24 116.7 61 82.0
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.3e-24 116.7 62 77.4
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.7e-24 116.3 65 78.5
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 1.7e-24 116.3 65 76.9
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 1.7e-24 116.3 64 76.6
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 1.7e-24 116.3 64 76.6
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 2.2e-24 115.9 65 78.5
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 2.2e-24 115.9 64 78.1
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.2e-24 115.9 64 78.1
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 2.8e-24 115.5 64 78.1
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 2.8e-24 115.5 64 76.6
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 2.8e-24 115.5 65 75.4
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.8e-24 115.5 65 76.9
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.8e-24 115.5 65 76.9
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 3.7e-24 115.2 66 75.8
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.7e-24 115.2 61 80.3
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 3.7e-24 115.2 60 83.3
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 4.8e-24 114.8 65 76.9
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 4.8e-24 114.8 64 78.1
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 6.3e-24 114.4 77 66.2
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 6.3e-24 114.4 66 75.8
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 6.3e-24 114.4 66 75.8
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.2e-24 114.0 64 76.6
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.1e-23 113.6 63 81.0
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 1.4e-23 113.2 65 75.4
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 1.4e-23 113.2 65 73.8
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 1.4e-23 113.2 65 73.8
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.4e-23 113.2 60 76.7
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 1.8e-23 112.8 65 72.3
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.4e-23 112.5 62 77.4
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 2.4e-23 112.5 60 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 4.1e-23 111.7 64 73.4
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 4.1e-23 111.7 64 73.4
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 4.1e-23 111.7 64 71.9
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.3e-23 111.3 64 75.0
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 5.3e-23 111.3 66 71.2
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 7.0e-23 110.9 65 69.2
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.0e-23 110.9 64 75.0
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.0e-23 110.9 65 73.8
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 9.1e-23 110.5 90 58.9
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.2e-22 110.2 84 59.5
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.2e-22 110.2 65 73.8
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.2e-22 110.2 65 73.8
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 1.6e-22 109.8 64 70.3
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 1.6e-22 109.8 64 71.9
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 1.6e-22 109.8 71 69.0
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 2.0e-22 109.4 70 65.7
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 2.0e-22 109.4 69 69.6
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 3.5e-22 108.6 64 71.9
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 3.5e-22 108.6 60 76.7
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 4.5e-22 108.2 65 69.2
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 5.9e-22 107.8 64 71.9
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 1.0e-21 107.1 64 75.0
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 1.3e-21 106.7 65 70.8
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 1.7e-21 106.3 80 60.0
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.9e-21 105.5 65 69.2
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 5.0e-21 104.8 57 71.9
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 6.5e-21 104.4 92 53.3
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.5e-21 104.0 64 73.4
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 1.9e-20 102.8 65 69.2
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 1.9e-20 102.8 65 69.2
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 5.5e-20 101.3 56 73.2
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 5.5e-20 101.3 63 63.5
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 7.2e-20 100.9 62 69.4
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 7.2e-20 100.9 50 78.0
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 9.4e-20 100.5 62 66.1
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 6.1e-19 97.8 89 52.8
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 6.1e-19 97.8 65 63.1
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.4e-18 96.7 60 68.3
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.4e-18 96.7 60 68.3
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 5.2e-18 94.7 62 66.1
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 8.8e-18 94.0 58 65.5
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 3.4e-17 92.0 43 93.0
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 3.4e-17 92.0 43 93.0
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 9.8e-17 90.5 63 60.3
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 1.3e-16 90.1 63 60.3
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 2.2e-16 89.4 65 60.0
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 6.3e-16 87.8 63 55.6
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.1e-15 87.0 64 60.9
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 1.1e-15 87.0 64 60.9
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.4e-15 86.7 64 59.4
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 5.4e-15 84.7 61 63.9
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 5.9e-14 81.3 38 86.8
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 1.3e-13 80.1 63 55.6
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 4.2e-12 75.1 36 80.6
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.1e-11 72.8 42 76.2
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 2.1e-11 72.8 36 75.0
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 1.5e-09 66.6 38 76.3
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 5.7e-09 64.7 64 51.6
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 2.8e-08 62.4 37 81.1
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 2.8e-08 62.4 64 48.4
C02p49050 Brassica napus HOM05D003896 ORTHO05D004517 7.0e-07 57.8 27 92.6
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 7.0e-07 57.8 64 46.9
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 4.5e-06 55.1 48 54.2


User provided reference genes

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