Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 4.3e-65 251.1 123 100.0
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 3.6e-64 248.1 123 98.4
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 5.8e-62 240.7 122 95.1
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 5.8e-62 240.7 123 95.1
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 1.7e-61 239.2 123 92.7
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 2.9e-61 238.4 123 93.5
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 3.8e-61 238.0 123 94.3
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 3.8e-61 238.0 123 92.7
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 8.4e-61 236.9 123 92.7
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 1.4e-60 236.1 136 87.5
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 4.6e-59 231.1 140 83.6
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 1.3e-58 229.6 122 88.5
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 3.3e-57 224.9 131 86.3
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 5.6e-57 224.2 123 86.2
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 2.6e-54 215.3 106 98.1
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 3.8e-53 211.5 115 86.1
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 3.8e-53 211.5 123 80.5
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 3.8e-53 211.5 123 82.1
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 6.4e-53 210.7 106 95.3
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.9e-52 209.1 121 81.0
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 2.4e-52 208.8 123 78.9
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 3.2e-52 208.4 121 80.2
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 4.2e-52 208.0 105 95.2
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 4.2e-52 208.0 123 76.4
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 4.2e-52 208.0 123 78.0
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 5.4e-52 207.6 123 78.9
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 7.1e-52 207.2 120 80.8
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 7.1e-52 207.2 123 78.9
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 7.1e-52 207.2 123 79.7
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 9.3e-52 206.8 121 80.2
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 79.7
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.6e-51 206.1 123 77.2
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 2.7e-51 205.3 121 79.3
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 2.7e-51 205.3 123 78.0
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 3.5e-51 204.9 123 78.0
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 3.5e-51 204.9 123 77.2
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 4.6e-51 204.5 123 78.0
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 6.0e-51 204.1 123 76.4
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 7.8e-51 203.8 123 78.0
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 7.8e-51 203.8 121 79.3
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 1.7e-50 202.6 115 81.7
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 2.3e-50 202.2 123 76.4
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.0e-50 201.8 115 80.9
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.0e-50 201.8 115 80.9
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.0e-50 201.8 115 80.9
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 3.0e-50 201.8 115 80.9
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 3.9e-50 201.4 115 80.9
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 3.9e-50 201.4 121 76.9
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 5.1e-50 201.1 115 79.1
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 5.1e-50 201.1 123 76.4
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 5.1e-50 201.1 123 75.6
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 6.6e-50 200.7 114 81.6
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 6.6e-50 200.7 122 76.2
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 1.1e-49 199.9 122 76.2
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 1.5e-49 199.5 123 75.6
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 1.5e-49 199.5 123 76.4
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.9e-49 199.1 113 81.4
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.9e-49 199.1 115 80.0
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 3.3e-49 198.4 115 80.0
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 3.3e-49 198.4 123 74.0
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 4.3e-49 198.0 106 92.5
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 4.3e-49 198.0 106 92.5
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 4.3e-49 198.0 106 92.5
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 4.3e-49 198.0 115 80.0
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 4.3e-49 198.0 115 80.0
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 4.3e-49 198.0 115 80.0
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 4.3e-49 198.0 116 78.4
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 5.6e-49 197.6 122 75.4
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 5.6e-49 197.6 123 74.8
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 7.3e-49 197.2 116 78.4
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 1.3e-48 196.4 123 74.0
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 1.3e-48 196.4 123 74.0
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 1.6e-48 196.1 123 72.4
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 2.8e-48 195.3 115 80.0
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 2.8e-48 195.3 123 74.8
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 4.8e-48 194.5 116 76.7
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 6.2e-48 194.1 113 79.6
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 8.1e-48 193.7 121 75.2
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 8.1e-48 193.7 123 73.2
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.1e-47 193.4 123 72.4
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 1.1e-47 193.4 123 73.2
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 1.4e-47 193.0 123 73.2
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 1.8e-47 192.6 122 73.8
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 1.8e-47 192.6 121 73.6
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 2.4e-47 192.2 116 75.9
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 4.0e-47 191.4 119 75.6
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 5.3e-47 191.0 123 73.2
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 9.0e-47 190.3 121 73.6
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 9.0e-47 190.3 119 74.8
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.5e-46 189.5 122 74.6
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.5e-46 189.5 122 74.6
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 2.6e-46 188.7 116 75.9
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 2.6e-46 188.7 123 72.4
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 3.4e-46 188.3 123 73.2
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 4.5e-46 188.0 121 72.7
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 7.6e-46 187.2 123 68.3
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 7.6e-46 187.2 123 70.7
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 1.3e-45 186.4 117 76.1
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 6.4e-45 184.1 123 68.3
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 8.4e-45 183.7 105 79.0
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.9e-44 182.6 109 76.1
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 3.5e-43 178.3 104 78.8
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 7.9e-43 177.2 106 76.4
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 1.8e-42 176.0 105 77.1
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.3e-42 175.6 106 74.5
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.3e-42 175.6 106 74.5
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 6.7e-42 174.1 106 75.5
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 3.3e-41 171.8 106 74.5
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 3.3e-41 171.8 99 79.8
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 5.6e-41 171.0 112 68.8
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 9.6e-41 170.2 98 80.6
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 1.3e-40 169.9 113 69.9
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 1.3e-40 169.9 120 68.3
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 1.6e-40 169.5 99 77.8
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 2.8e-40 168.7 97 79.4
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 4.8e-40 167.9 120 65.8
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 1.4e-39 166.4 106 70.8
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 1.8e-39 166.0 106 70.8
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 2.4e-39 165.6 104 71.2
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 3.1e-39 165.2 86 87.2
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 4.0e-39 164.9 123 70.7
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 6.9e-39 164.1 121 68.6
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 9.0e-39 163.7 98 76.5
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 3.3e-33 145.2 113 55.8
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 1.3e-29 133.3 111 55.0
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 5.5e-28 127.9 86 69.8
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.6e-27 126.3 107 57.9
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 8.2e-24 114.0 65 78.5
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 6.9e-23 110.9 95 55.8
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 1.5e-17 93.2 57 75.4
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 3.7e-16 88.6 68 61.8
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 3.1e-15 85.5 69 59.4
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 2.0e-14 82.8 65 55.4
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 5.5e-12 74.7 44 65.9
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 9.4e-12 73.9 61 50.8
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 2.4e-07 59.3 41 63.4


User provided reference genes

Program Settings