Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 3.5e-150 535.0 292 100.0
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 7.4e-116 421.0 293 80.9
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 2.9e-112 409.1 281 81.1
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 7.9e-110 401.0 282 79.8
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 2.0e-105 386.3 282 77.3
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.4e-98 363.6 299 71.9
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.6e-97 360.1 300 71.3
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.7e-81 306.2 282 62.4
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 4.5e-81 305.4 220 78.2
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 5.9e-81 305.1 291 62.5
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.1e-78 296.6 293 58.4
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.3e-77 293.1 297 58.2
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 5.2e-77 292.0 298 57.7
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 6.8e-77 291.6 293 60.1
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 8.9e-77 291.2 295 56.9
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.6e-76 289.7 287 59.9
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.6e-76 289.7 293 58.7
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 3.0e-72 276.2 290 59.3
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.9e-71 273.5 295 56.9
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 2.6e-68 263.1 327 51.1
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.7e-67 259.2 293 54.6
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 2.4e-66 256.5 294 54.1
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.7e-64 250.4 302 49.0
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.1e-63 247.7 294 53.1
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 1.5e-63 247.3 296 52.4
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 5.6e-63 245.4 297 48.5
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 7.3e-63 245.0 293 51.5
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 2.8e-62 243.0 301 49.5
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 4.7e-62 242.3 329 48.0
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 6.2e-62 241.9 298 50.0
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.8e-61 240.4 304 46.7
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.3e-61 240.0 297 47.5
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.5e-60 237.3 304 46.1
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.4e-60 235.7 304 45.7
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 4.9e-59 232.3 297 46.5
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 6.4e-59 231.9 296 47.3
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.4e-58 230.7 307 46.9
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.4e-58 230.7 302 45.4
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.0e-56 223.0 302 45.0
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 5.1e-56 222.2 304 45.7
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 8.6e-56 221.5 304 46.1
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.9e-55 220.3 302 44.7
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 7.3e-55 218.4 286 50.0
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 7.3e-55 218.4 286 50.0
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 7.3e-55 218.4 304 44.4
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 9.5e-55 218.0 288 50.7
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.2e-54 217.6 297 45.1
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.2e-54 217.6 286 46.2
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.8e-54 216.5 300 45.3
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 2.8e-54 216.5 303 44.9
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 3.6e-54 216.1 306 44.1
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 3.6e-54 216.1 298 46.3
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.7e-54 215.7 297 44.8
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 8.1e-54 214.9 293 45.4
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 3.1e-53 213.0 291 45.4
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 5.2e-53 212.2 300 46.3
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.2e-52 211.1 299 44.1
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.2e-52 211.1 297 44.4
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 2.0e-52 210.3 302 42.7
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 2.6e-52 209.9 294 45.2
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 4.4e-52 209.1 301 45.5
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 7.6e-52 208.4 300 43.0
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.3e-51 207.6 295 43.7
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 2.2e-51 206.8 293 44.0
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 2.9e-51 206.5 290 45.5
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 3.8e-51 206.1 288 45.8
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 6.4e-51 205.3 305 41.6
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.1e-50 204.5 288 45.8
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.1e-50 204.5 297 43.1
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.4e-50 204.1 292 44.9
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.9e-50 203.8 275 50.2
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.9e-50 203.8 302 42.1
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.4e-50 203.4 294 43.9
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 4.1e-50 202.6 288 42.7
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 4.1e-50 202.6 356 39.6
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 5.4e-50 202.2 300 41.7
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 9.2e-50 201.4 303 43.6
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 9.2e-50 201.4 283 45.9
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.2e-49 201.1 293 43.7
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-49 201.1 304 43.1
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.7e-48 197.2 295 44.1
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 2.3e-48 196.8 284 46.1
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 5.1e-48 195.7 296 41.6
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.5e-47 194.1 301 40.5
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.9e-47 193.7 304 40.5
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.9e-47 193.7 260 45.4
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 4.3e-47 192.6 296 41.9
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 4.3e-47 192.6 305 40.3
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 2.1e-46 190.3 301 41.9
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.8e-46 189.9 303 43.2
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 2.8e-46 189.9 288 45.5
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.4e-45 187.6 291 41.9
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.4e-45 186.8 298 42.6
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 3.1e-45 186.4 303 43.6
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 4.0e-45 186.0 298 39.3
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.0e-45 186.0 297 42.1
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.0e-45 186.0 297 42.1
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 8.9e-45 184.9 287 43.2
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 8.9e-45 184.9 352 36.9
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.5e-44 184.1 307 41.0
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 5.8e-44 182.2 307 41.4
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 6.4e-43 178.7 302 42.1
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.9e-42 177.2 301 40.2
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 3.2e-42 176.4 300 38.3
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.2e-42 176.4 295 41.0
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 5.4e-42 175.6 285 39.6
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 7.1e-42 175.3 286 43.0
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 2.7e-41 173.3 352 36.1
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 2.7e-41 173.3 298 40.6
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 6.0e-41 172.2 303 39.3
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 1.3e-40 171.0 298 41.6
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.7e-40 170.6 313 37.1
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 2.3e-40 170.2 295 40.3
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.3e-40 170.2 292 39.4
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.9e-40 169.5 294 40.1
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 3.9e-40 169.5 362 32.6
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 3.3e-39 166.4 343 36.4
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 9.6e-39 164.9 294 39.5
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 2.8e-38 163.3 291 37.5
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 3.6e-38 162.9 155 52.9
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 6.9e-37 158.7 312 36.9
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 3.4e-36 156.4 290 39.3
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 4.9e-35 152.5 173 52.6
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 4.9e-35 152.5 173 52.6
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.1e-34 151.4 304 38.2
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.1e-34 151.4 231 42.4
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.4e-34 151.0 304 39.1
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.4e-34 150.2 288 38.2
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 4.2e-34 149.4 125 56.8
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 7.1e-34 148.7 205 40.5
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 2.7e-33 146.7 292 38.0
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 3.5e-33 146.4 190 45.8
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 5.1e-32 142.5 365 32.6
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 5.1e-32 142.5 238 39.5
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 8.7e-32 141.7 162 47.5
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 2.8e-30 136.7 239 40.6
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 4.0e-29 132.9 149 43.0
BcaB02g06539 Brassica carinata HOM05D003707 ORTHO05D004309 2.0e-28 130.6 79 96.2
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.9e-27 126.7 157 42.0
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 3.8e-27 126.3 160 45.0
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.8e-27 126.3 157 42.0
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.4e-27 125.2 219 37.4
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 3.2e-26 123.2 152 45.4
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 6.0e-25 119.0 284 33.5
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.8e-24 117.5 316 31.6
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-24 117.5 130 47.7
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.5e-23 114.4 311 29.9
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.5e-23 114.4 290 31.4
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.1e-21 106.7 246 34.6
BcaB02g06538 Brassica carinata HOM05D003707 ORTHO05D004309 5.3e-21 105.9 56 100.0
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 6.9e-21 105.5 232 34.9
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-20 104.8 207 41.1
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.2e-20 104.8 207 41.1
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 2.6e-20 103.6 189 39.2
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 1.0e-19 101.7 53 100.0
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 6.5e-19 99.0 246 33.3
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.0e-16 91.7 187 35.3
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 3.0e-16 90.1 193 38.9
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 3.9e-16 89.7 284 26.8
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 6.7e-16 89.0 231 32.0
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 8.2e-14 82.0 72 55.6
BraA09t41558Z Brassica rapa HOM05D065654 ORTHO05D032288 2.4e-13 80.5 225 36.0
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.4e-13 80.5 356 25.8
A09p61960 Brassica napus HOM05D065654 ORTHO05D032288 4.1e-13 79.7 225 35.6
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 5.3e-13 79.3 84 48.8
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.5e-11 72.0 48 68.8
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 1.9e-10 70.9 122 40.2
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.2e-09 68.2 249 26.1
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 6.1e-09 65.9 217 30.0
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 7.9e-09 65.5 59 49.2
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 1.3e-08 64.7 89 43.8
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.7e-07 58.5 50 56.0
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 8.2e-06 55.5 182 30.2


User provided reference genes

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